(11 nodes) Mixed, incl. Ribosomal subunit, and KOW (Kyprides, Ouzounis, Woese) motif. network (Pseudoalteromonas telluritireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	A2I98_06730	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	KYL35454.1	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	KYL35541.1	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	rplX	50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	KYL35134.1	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	A2I98_13910	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	KYL32581.1	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	KYL32171.1	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	KYL32174.1	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	KYL32176.1	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	KYL32178.1	50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)

Your Current Organism:

Pseudoalteromonas telluritireducens

NCBI taxonomy Id: 162160
Other names: DSM 16098, P. telluritireducens, Pseudoalteromonas sp. Se-1-2-red, Pseudoalteromonas sp. Te-1-1, VKM B-2382, strain Se-1-2-red

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A2I98_06730	A2I98_13910	A2I98_06730	A2I98_13910	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32171.1	A2I98_06730	A2I98_18430	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32174.1	A2I98_06730	A2I98_18445	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32176.1	A2I98_06730	A2I98_18455	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32178.1	A2I98_06730	A2I98_18465	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32581.1	A2I98_06730	A2I98_16670	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35134.1	A2I98_06730	A2I98_07990	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35454.1	A2I98_06730	A2I98_06775	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35541.1	A2I98_06730	A2I98_06790	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	rplX	A2I98_06730	A2I98_06795	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	A2I98_06730	A2I98_13910	A2I98_06730	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	KYL32171.1	A2I98_13910	A2I98_18430	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	KYL32174.1	A2I98_13910	A2I98_18445	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	KYL32176.1	A2I98_13910	A2I98_18455	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	KYL32178.1	A2I98_13910	A2I98_18465	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	KYL32581.1	A2I98_13910	A2I98_16670	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	KYL35134.1	A2I98_13910	A2I98_07990	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	KYL35454.1	A2I98_13910	A2I98_06775	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	KYL35541.1	A2I98_13910	A2I98_06790	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_13910	rplX	A2I98_13910	A2I98_06795	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

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