(7 nodes) Large ribosomal subunit network (Pseudoalteromonas telluritireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KYL35450.1	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
	rpmD	50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology. (60 aa)
	KYL35458.1	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	KYL32581.1	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	KYL32174.1	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	KYL32176.1	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	rpmF	Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology. (56 aa)

Your Current Organism:

Pseudoalteromonas telluritireducens

NCBI taxonomy Id: 162160
Other names: DSM 16098, P. telluritireducens, Pseudoalteromonas sp. Se-1-2-red, Pseudoalteromonas sp. Te-1-1, VKM B-2382, strain Se-1-2-red

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KYL32174.1	KYL32176.1	A2I98_18445	A2I98_18455	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32174.1	KYL32581.1	A2I98_18445	A2I98_16670	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32174.1	KYL35450.1	A2I98_18445	A2I98_06755	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32174.1	KYL35458.1	A2I98_18445	A2I98_06800	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32174.1	rpmD	A2I98_18445	A2I98_06760	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32174.1	rpmF	A2I98_18445	A2I98_19165	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
KYL32176.1	KYL32174.1	A2I98_18455	A2I98_18445	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32176.1	KYL32581.1	A2I98_18455	A2I98_16670	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32176.1	KYL35450.1	A2I98_18455	A2I98_06755	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32176.1	KYL35458.1	A2I98_18455	A2I98_06800	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32176.1	rpmD	A2I98_18455	A2I98_06760	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32176.1	rpmF	A2I98_18455	A2I98_19165	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
KYL32581.1	KYL32174.1	A2I98_16670	A2I98_18445	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32581.1	KYL32176.1	A2I98_16670	A2I98_18455	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32581.1	KYL35450.1	A2I98_16670	A2I98_06755	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32581.1	KYL35458.1	A2I98_16670	A2I98_06800	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KYL32581.1	rpmD	A2I98_16670	A2I98_06760	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL32581.1	rpmF	A2I98_16670	A2I98_19165	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KYL35450.1	KYL32174.1	A2I98_06755	A2I98_18445	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYL35450.1	KYL32176.1	A2I98_06755	A2I98_18455	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

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