35 items (Paenibacillus naphthalenovorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS22878.1	Two-component system sensor histidine kinase. (465 aa)
	ALS23799.1	Two-component system sensor histidine kinase. (358 aa)
	ALS24607.1	Histidine kinase. (616 aa)
	ALS24695.1	Membrane protein. (499 aa)
	ALS24722.1	Two-component system sensor histidine kinase. (441 aa)
	ALS24958.1	Histidine kinase. (602 aa)
	ALS22029.1	Two-component system sensor histidine kinase. (453 aa)
	ALS22064.1	Chemotaxis protein. (697 aa)
	ALS22572.1	Two-component system sensor histidine kinase. (552 aa)
	ALS22722.1	Histidine kinase. (615 aa)
	ALS25104.1	Methyl-accepting chemotaxis sensory transducer. (916 aa)
	ALS25186.1	Two-component system sensor histidine kinase. (496 aa)
	ALS25196.1	Signal transduction histidine kinase. (488 aa)
	ALS25199.1	Histidine kinase. (582 aa)
	ALS22004.1	Histidine kinase. (618 aa)
	ALS21983.1	Two-component system sensor histidine kinase. (356 aa)
	ALS21972.1	Two-component system sensor histidine kinase. (360 aa)
	ALS21802.1	Histidine kinase. (587 aa)
	ALS20926.1	Chemotaxis protein CheY. (427 aa)
	ALS20901.1	Chemotaxis protein. (739 aa)
	ALS20880.1	Methyl-accepting chemotaxis sensory transducer. (614 aa)
	ALS20876.1	Histidine kinase. (598 aa)
	ALS20750.1	Integral membrane sensor signal transduction histidine kinase. (593 aa)
	ALS20708.1	Two-component system sensor histidine kinase. (506 aa)
	ALS20406.1	Histidine kinase. (603 aa)
	ALS20404.1	Membrane protein. (480 aa)
	ALS23150.1	Chemotaxis protein. (725 aa)
	ALS23115.1	Two-component system sensor histidine kinase. (477 aa)
	ALS23031.1	Histidine kinase. (462 aa)
	ALS22896.1	Two-component system sensor histidine kinase. (485 aa)
	ALS23793.1	Histidine kinase. (570 aa)
	ALS23710.1	Methyl-accepting chemotaxis sensory transducer. (578 aa)
	ALS23669.1	C50 carotenoid epsilon cyclase. (616 aa)
	ALS23434.1	Two-component system sensor histidine kinase. (556 aa)
	ALS23299.1	Chemotaxis protein. (561 aa)

Your Current Organism:

Paenibacillus naphthalenovorans

NCBI taxonomy Id: 162209
Other names: ATCC BAA-206, DSM 14203, P. naphthalenovorans, Paenibacillus naphthalenovorans Daane et al. 2002, Paenibacillus sp. PR-N1, Paenibacillus sp. PR-N16, Paenibacillus sp. PR-N5, Paenibacillus sp. PS-N1, Paenibacillus sp. PS-N6, Paenibacillus sp. SA-N1, strain PR-N1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS20404.1	ALS20406.1	IJ22_00120	IJ22_00140	Membrane protein.	Histidine kinase.	0.608
ALS20406.1	ALS20404.1	IJ22_00140	IJ22_00120	Histidine kinase.	Membrane protein.	0.608
ALS20708.1	ALS22572.1	IJ22_03190	IJ22_21980	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.712
ALS20708.1	ALS23115.1	IJ22_03190	IJ22_27420	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.525
ALS20876.1	ALS22572.1	IJ22_04880	IJ22_21980	Histidine kinase.	Two-component system sensor histidine kinase.	0.467
ALS21972.1	ALS22572.1	IJ22_15960	IJ22_21980	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.463
ALS21983.1	ALS22572.1	IJ22_16070	IJ22_21980	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.463
ALS22029.1	ALS22572.1	IJ22_16550	IJ22_21980	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.714
ALS22029.1	ALS23115.1	IJ22_16550	IJ22_27420	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.563
ALS22572.1	ALS20708.1	IJ22_21980	IJ22_03190	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.712
ALS22572.1	ALS20876.1	IJ22_21980	IJ22_04880	Two-component system sensor histidine kinase.	Histidine kinase.	0.467
ALS22572.1	ALS21972.1	IJ22_21980	IJ22_15960	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.463
ALS22572.1	ALS21983.1	IJ22_21980	IJ22_16070	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.463
ALS22572.1	ALS22029.1	IJ22_21980	IJ22_16550	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.714
ALS22572.1	ALS22722.1	IJ22_21980	IJ22_23490	Two-component system sensor histidine kinase.	Histidine kinase.	0.474
ALS22572.1	ALS22878.1	IJ22_21980	IJ22_25050	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.472
ALS22572.1	ALS22896.1	IJ22_21980	IJ22_25230	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.467
ALS22572.1	ALS23115.1	IJ22_21980	IJ22_27420	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.535
ALS22572.1	ALS23434.1	IJ22_21980	IJ22_30610	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.474
ALS22572.1	ALS24607.1	IJ22_21980	IJ22_43210	Two-component system sensor histidine kinase.	Histidine kinase.	0.466

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