63 items (Paenibacillus naphthalenovorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS20788.1	Histidine kinase. (581 aa)
	ALS22393.1	Chemotaxis protein CheA. (748 aa)
	ALS22074.1	Histidine kinase. (541 aa)
	ALS22029.1	Two-component system sensor histidine kinase. (453 aa)
	ALS22004.1	Histidine kinase. (618 aa)
	ALS21983.1	Two-component system sensor histidine kinase. (356 aa)
	ALS21972.1	Two-component system sensor histidine kinase. (360 aa)
	ALS21886.1	Histidine kinase. (596 aa)
	ALS22616.1	Subunit B of DNA gyrase. (655 aa)
	ALS22580.1	Signal transduction histidine kinase. (270 aa)
	ALS23115.1	Two-component system sensor histidine kinase. (477 aa)
	ALS23148.1	Two-component system sensor histidine kinase. (427 aa)
	ALS23305.1	PAS domain-containing two-component system sensor histidine kinase. (430 aa)
	ALS23324.1	Two-component system sensor histidine kinase. (277 aa)
	ALS23434.1	Two-component system sensor histidine kinase. (556 aa)
	ALS23559.1	Histidine kinase. (524 aa)
	ALS23646.1	Histidine kinase. (525 aa)
	ALS23660.1	PAS domain-containing two-component system sensor histidine kinase. (708 aa)
	ALS23669.1	C50 carotenoid epsilon cyclase. (616 aa)
	ALS23793.1	Histidine kinase. (570 aa)
	ALS23799.1	Two-component system sensor histidine kinase. (358 aa)
	ALS23907.1	Histidine kinase. (642 aa)
	ALS23937.1	PAS domain-containing two-component system sensor histidine kinase. (624 aa)
	ALS24015.1	Histidine kinase. (533 aa)
	ALS24291.1	Histidine kinase. (579 aa)
	ALS24345.1	Histidine kinase. (334 aa)
	ALS24353.1	Histidine kinase. (563 aa)
	ALS24491.1	Histidine kinase; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase. (384 aa)
	gyrB	Subunit B of DNA gyrase; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (637 aa)
	ALS24607.1	Histidine kinase. (616 aa)
	ALS24674.1	Histidine kinase-like ATPase. (437 aa)
	ALS24695.1	Membrane protein. (499 aa)
	ALS24722.1	Two-component system sensor histidine kinase. (441 aa)
	ALS24761.1	Diguanylate cyclase. (353 aa)
	ALS24958.1	Histidine kinase. (602 aa)
	ALS25045.1	Histidine kinase. (1027 aa)
	ALS25102.1	Chemotaxis protein CheA. (670 aa)
	ALS25141.1	Histidine kinase. (367 aa)
	ALS25186.1	Two-component system sensor histidine kinase. (496 aa)
	ALS25196.1	Signal transduction histidine kinase. (488 aa)
	ALS25199.1	Histidine kinase. (582 aa)
	ALS25280.1	PAS domain-containing two-component system sensor histidine kinase. (534 aa)
	htpG	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. (626 aa)
	ALS25420.1	Histidine kinase. (431 aa)
	ALS21802.1	Histidine kinase. (587 aa)
	ALS21655.1	Chemotaxis protein CheA. (684 aa)
	ALS21474.1	Signal transduction histidine kinase. (544 aa)
	ALS21212.1	Histidine kinase. (535 aa)
	ALS20876.1	Histidine kinase. (598 aa)
	ALS20761.1	Integral membrane sensor signal transduction histidine kinase. (723 aa)
	ALS20757.1	PAS domain-containing two-component system sensor histidine kinase. (516 aa)
	ALS20750.1	Integral membrane sensor signal transduction histidine kinase. (593 aa)
	ALS20708.1	Two-component system sensor histidine kinase. (506 aa)
	ALS20406.1	Histidine kinase. (603 aa)
	ALS20404.1	Membrane protein. (480 aa)
	ALS22572.1	Two-component system sensor histidine kinase. (552 aa)
	mutL	DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (640 aa)
	ALS22449.1	Signal transduction histidine kinase. (462 aa)
	ALS22722.1	Histidine kinase. (615 aa)
	spoIIAB	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. (148 aa)
	ALS22878.1	Two-component system sensor histidine kinase. (465 aa)
	ALS22896.1	Two-component system sensor histidine kinase. (485 aa)
	ALS23031.1	Histidine kinase. (462 aa)

Your Current Organism:

Paenibacillus naphthalenovorans

NCBI taxonomy Id: 162209
Other names: ATCC BAA-206, DSM 14203, P. naphthalenovorans, Paenibacillus naphthalenovorans Daane et al. 2002, Paenibacillus sp. PR-N1, Paenibacillus sp. PR-N16, Paenibacillus sp. PR-N5, Paenibacillus sp. PS-N1, Paenibacillus sp. PS-N6, Paenibacillus sp. SA-N1, strain PR-N1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS20404.1	ALS20406.1	IJ22_00120	IJ22_00140	Membrane protein.	Histidine kinase.	0.608
ALS20404.1	ALS21474.1	IJ22_00120	IJ22_10960	Membrane protein.	Signal transduction histidine kinase.	0.425
ALS20404.1	ALS23305.1	IJ22_00120	IJ22_29320	Membrane protein.	PAS domain-containing two-component system sensor histidine kinase.	0.496
ALS20404.1	ALS25045.1	IJ22_00120	IJ22_47830	Membrane protein.	Histidine kinase.	0.701
ALS20404.1	ALS25141.1	IJ22_00120	IJ22_48790	Membrane protein.	Histidine kinase.	0.400
ALS20404.1	ALS25280.1	IJ22_00120	IJ22_50180	Membrane protein.	PAS domain-containing two-component system sensor histidine kinase.	0.498
ALS20406.1	ALS20404.1	IJ22_00140	IJ22_00120	Histidine kinase.	Membrane protein.	0.608
ALS20708.1	ALS22572.1	IJ22_03190	IJ22_21980	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.712
ALS20708.1	ALS23115.1	IJ22_03190	IJ22_27420	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.525
ALS20708.1	ALS23305.1	IJ22_03190	IJ22_29320	Two-component system sensor histidine kinase.	PAS domain-containing two-component system sensor histidine kinase.	0.474
ALS20708.1	ALS24674.1	IJ22_03190	IJ22_43880	Two-component system sensor histidine kinase.	Histidine kinase-like ATPase.	0.402
ALS20708.1	ALS25045.1	IJ22_03190	IJ22_47830	Two-component system sensor histidine kinase.	Histidine kinase.	0.475
ALS20708.1	ALS25280.1	IJ22_03190	IJ22_50180	Two-component system sensor histidine kinase.	PAS domain-containing two-component system sensor histidine kinase.	0.441
ALS20757.1	ALS24674.1	IJ22_03680	IJ22_43880	PAS domain-containing two-component system sensor histidine kinase.	Histidine kinase-like ATPase.	0.741
ALS20761.1	ALS21474.1	IJ22_03720	IJ22_10960	Integral membrane sensor signal transduction histidine kinase.	Signal transduction histidine kinase.	0.402
ALS20761.1	ALS22572.1	IJ22_03720	IJ22_21980	Integral membrane sensor signal transduction histidine kinase.	Two-component system sensor histidine kinase.	0.471
ALS20761.1	ALS23148.1	IJ22_03720	IJ22_27750	Integral membrane sensor signal transduction histidine kinase.	Two-component system sensor histidine kinase.	0.712
ALS20761.1	ALS23305.1	IJ22_03720	IJ22_29320	Integral membrane sensor signal transduction histidine kinase.	PAS domain-containing two-component system sensor histidine kinase.	0.492
ALS20761.1	ALS24345.1	IJ22_03720	IJ22_40350	Integral membrane sensor signal transduction histidine kinase.	Histidine kinase.	0.438
ALS20761.1	ALS25045.1	IJ22_03720	IJ22_47830	Integral membrane sensor signal transduction histidine kinase.	Histidine kinase.	0.567

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