(5 nodes) Mixed, incl. Export across plasma membrane, and NAD(P)-binding domain network (Microbacterium hominis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KIC60291.1	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	KIC59915.1	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	KIC59916.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa)
	KIC59917.1	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	KIC59918.1	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)

Your Current Organism:

Microbacterium hominis

NCBI taxonomy Id: 162426
Other names: CIP 105731, DSM 12509, IFO 15708, JCM 12413, LCDC 84-209, M. hominis, NBRC 15708, VKM Ac-2081

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIC59915.1	KIC59916.1	RM52_00370	RM52_00375	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
KIC59915.1	KIC59917.1	RM52_00370	RM52_00380	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KIC59915.1	KIC59918.1	RM52_00370	RM52_00385	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
KIC59915.1	KIC60291.1	RM52_00370	RM52_00365	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KIC59916.1	KIC59915.1	RM52_00375	RM52_00370	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
KIC59916.1	KIC59917.1	RM52_00375	RM52_00380	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KIC59916.1	KIC59918.1	RM52_00375	RM52_00385	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
KIC59916.1	KIC60291.1	RM52_00375	RM52_00365	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
KIC59917.1	KIC59915.1	RM52_00380	RM52_00370	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KIC59917.1	KIC59916.1	RM52_00380	RM52_00375	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KIC59917.1	KIC59918.1	RM52_00380	RM52_00385	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
KIC59917.1	KIC60291.1	RM52_00380	RM52_00365	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KIC59918.1	KIC59915.1	RM52_00385	RM52_00370	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
KIC59918.1	KIC59916.1	RM52_00385	RM52_00375	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
KIC59918.1	KIC59917.1	RM52_00385	RM52_00380	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
KIC59918.1	KIC60291.1	RM52_00385	RM52_00365	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
KIC60291.1	KIC59915.1	RM52_00365	RM52_00370	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KIC60291.1	KIC59916.1	RM52_00365	RM52_00375	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
KIC60291.1	KIC59917.1	RM52_00365	RM52_00380	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KIC60291.1	KIC59918.1	RM52_00365	RM52_00385	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500