STRINGSTRING
yhhW yhhW lox_1 lox_1 kynA kynA lox_2 lox_2 pcaH_1 pcaH_1 hmgA hmgA pcaH_2 pcaH_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yhhWQuercetin 2,3-dioxygenase; Belongs to the pirin family. (231 aa)
lox_1Linoleate 9/13-lipoxygenase precursor. (588 aa)
kynATryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. (260 aa)
lox_2Linoleate 9/13-lipoxygenase precursor. (603 aa)
pcaH_1Protocatechuate 3,4-dioxygenase beta chain. (224 aa)
hmgAHomogentisate 1,2-dioxygenase. (389 aa)
pcaH_2Protocatechuate 3,4-dioxygenase beta chain. (228 aa)
Your Current Organism:
Gemmata sp. SHPL17
NCBI taxonomy Id: 1630693
Other names: G. sp. SH-PL17, Gemmata sp. SH-PL17
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