STRINGSTRING
AMV25617.1 AMV25617.1 AMV25974.1 AMV25974.1 kamA kamA AMV26362.1 AMV26362.1 AMV26652.1 AMV26652.1 AMV26653.1 AMV26653.1 AMV26714.1 AMV26714.1 gcvH_1 gcvH_1 AMV27022.1 AMV27022.1 garD garD murQ murQ AMV27250.1 AMV27250.1 nfdA_2 nfdA_2 AMV27414.1 AMV27414.1 gcvPB gcvPB gcvPA gcvPA speA speA gcvH_2 gcvH_2 gcvT_2 gcvT_2 gutB gutB glyA glyA kynA kynA AMV28279.1 AMV28279.1 AMV28498.1 AMV28498.1 coaBC_1 coaBC_1 coaBC_2 coaBC_2 thlA thlA AMV28870.1 AMV28870.1 dtd dtd paaF paaF AMV29188.1 AMV29188.1 hmgA hmgA AMV29602.1 AMV29602.1 nagB nagB hpcH hpcH fadJ_1 fadJ_1 AMV22830.1 AMV22830.1 yjjN yjjN anmK anmK nfdA_1 nfdA_1 fdm fdm fadJ_2 fadJ_2 hutH hutH AMV23523.1 AMV23523.1 kynB_1 kynB_1 kynB_2 kynB_2 kynU kynU ald ald AMV24313.1 AMV24313.1 gcvT_1 gcvT_1 hutI hutI hutU hutU AMV25090.1 AMV25090.1 ptlH ptlH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMV25617.1Hypothetical protein. (279 aa)
AMV25974.1Glucuronate isomerase. (419 aa)
kamAL-lysine 2,3-aminomutase. (485 aa)
AMV26362.1Amidohydrolase. (318 aa)
AMV26652.1N-acyl-D-aspartate deacylase. (865 aa)
AMV26653.1Dihydroorotase. (515 aa)
AMV26714.1Phytanoyl-CoA dioxygenase (PhyH). (247 aa)
gcvH_1Glycine cleavage system H protein. (170 aa)
AMV27022.1Ureidoglycolate lyase. (289 aa)
garDD-galactarate dehydratase. (522 aa)
murQN-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. (624 aa)
AMV27250.1Imidazolonepropionase. (420 aa)
nfdA_2N-substituted formamide deformylase precursor. (553 aa)
AMV27414.1Phosphopantothenate--cysteine ligase. (232 aa)
gcvPBPutative glycine dehydrogenase (decarboxylating) subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (487 aa)
gcvPAPutative glycine dehydrogenase (decarboxylating) subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (448 aa)
speABiosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (649 aa)
gcvH_2Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (137 aa)
gcvT_2Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. (360 aa)
gutBSorbitol dehydrogenase. (344 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (419 aa)
kynATryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. (260 aa)
AMV28279.1Phytanoyl-CoA dioxygenase (PhyH). (284 aa)
AMV28498.1Phosphopantothenate--cysteine ligase. (250 aa)
coaBC_1Coenzyme A biosynthesis bifunctional protein CoaBC. (246 aa)
coaBC_2Coenzyme A biosynthesis bifunctional protein CoaBC. (233 aa)
thlAAcetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
AMV28870.1D-threonine aldolase. (373 aa)
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (153 aa)
paaF2,3-dehydroadipyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
AMV29188.1Ureidoglycolate lyase. (237 aa)
hmgAHomogentisate 1,2-dioxygenase. (389 aa)
AMV29602.1Hypothetical protein. (98 aa)
nagBGlucosamine-6-phosphate deaminase. (644 aa)
hpcH4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family. (264 aa)
fadJ_1Fatty acid oxidation complex subunit alpha. (293 aa)
AMV22830.1Metal-dependent hydrolase. (291 aa)
yjjNPutative L-galactonate oxidoreductase. (342 aa)
anmKAnhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. (399 aa)
nfdA_1N-substituted formamide deformylase precursor. (875 aa)
fdmFormaldehyde dismutase. (391 aa)
fadJ_2Fatty acid oxidation complex subunit alpha. (279 aa)
hutHHistidine ammonia-lyase. (503 aa)
AMV23523.1Dihydroorotase. (492 aa)
kynB_1Kynurenine formamidase. (216 aa)
kynB_2Kynurenine formamidase. (256 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (427 aa)
aldAlanine dehydrogenase; Belongs to the AlaDH/PNT family. (367 aa)
AMV24313.1Phytanoyl-CoA dioxygenase (PhyH). (277 aa)
gcvT_1Aminomethyltransferase; Belongs to the GcvT family. (340 aa)
hutIImidazolonepropionase. (410 aa)
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (553 aa)
AMV25090.1D-threonine aldolase. (361 aa)
ptlH1-deoxypentalenic acid 11-beta-hydroxylase. (260 aa)
Your Current Organism:
Gemmata sp. SHPL17
NCBI taxonomy Id: 1630693
Other names: G. sp. SH-PL17, Gemmata sp. SH-PL17
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