(24 nodes) Phycobilisome network (Gemmata sp. SHPL17)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMV22852.1	Hypothetical protein. (370 aa)
	AMV22977.1	Hypothetical protein. (252 aa)
	AMV23265.1	Putative lyase. (269 aa)
	AMV23507.1	Hypothetical protein. (228 aa)
	AMV23554.1	HEAT repeat protein. (218 aa)
	AMV23624.1	Hypothetical protein. (303 aa)
	AMV24000.1	Hypothetical protein. (292 aa)
	AMV24221.1	Hypothetical protein. (349 aa)
	AMV24694.1	Hypothetical protein. (221 aa)
	AMV25052.1	HEAT repeat protein. (765 aa)
	AMV25852.1	HEAT repeat protein. (694 aa)
	AMV26600.1	HEAT repeat protein. (368 aa)
	AMV26947.1	Hypothetical protein. (370 aa)
	AMV27057.1	Hypothetical protein. (238 aa)
	AMV27894.1	Hypothetical protein. (234 aa)
	AMV28234.1	HEAT repeat protein. (664 aa)
	AMV28615.1	Hypothetical protein. (257 aa)
	AMV28766.1	Hypothetical protein. (806 aa)
	AMV29095.1	Hypothetical protein. (345 aa)
	AMV29445.1	Hypothetical protein. (437 aa)
	AMV29704.1	HEAT repeat protein. (475 aa)
	AMV29772.1	Hypothetical protein. (634 aa)
	AMV30142.1	Hypothetical protein. (357 aa)
	AMV30263.1	Putative lyase. (765 aa)

Your Current Organism:

Gemmata sp. SHPL17

NCBI taxonomy Id: 1630693
Other names: G. sp. SH-PL17, Gemmata sp. SH-PL17

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMV22852.1	AMV22977.1	VT84_00470	VT84_01105	Hypothetical protein.	Hypothetical protein.	0.749
AMV22852.1	AMV27057.1	VT84_00470	VT84_21825	Hypothetical protein.	Hypothetical protein.	0.753
AMV22852.1	AMV28615.1	VT84_00470	VT84_29695	Hypothetical protein.	Hypothetical protein.	0.712
AMV22852.1	AMV29095.1	VT84_00470	VT84_32170	Hypothetical protein.	Hypothetical protein.	0.731
AMV22977.1	AMV22852.1	VT84_01105	VT84_00470	Hypothetical protein.	Hypothetical protein.	0.749
AMV22977.1	AMV23507.1	VT84_01105	VT84_03795	Hypothetical protein.	Hypothetical protein.	0.734
AMV22977.1	AMV28615.1	VT84_01105	VT84_29695	Hypothetical protein.	Hypothetical protein.	0.643
AMV22977.1	AMV29095.1	VT84_01105	VT84_32170	Hypothetical protein.	Hypothetical protein.	0.535
AMV22977.1	AMV29445.1	VT84_01105	VT84_33940	Hypothetical protein.	Hypothetical protein.	0.720
AMV23507.1	AMV22977.1	VT84_03795	VT84_01105	Hypothetical protein.	Hypothetical protein.	0.734
AMV23507.1	AMV27057.1	VT84_03795	VT84_21825	Hypothetical protein.	Hypothetical protein.	0.773
AMV23507.1	AMV29095.1	VT84_03795	VT84_32170	Hypothetical protein.	Hypothetical protein.	0.770
AMV23554.1	AMV25052.1	VT84_04030	VT84_11690	HEAT repeat protein.	HEAT repeat protein.	0.647
AMV23554.1	AMV26600.1	VT84_04030	VT84_19535	HEAT repeat protein.	HEAT repeat protein.	0.761
AMV23554.1	AMV28234.1	VT84_04030	VT84_27755	HEAT repeat protein.	HEAT repeat protein.	0.766
AMV24000.1	AMV24221.1	VT84_06365	VT84_07475	Hypothetical protein.	Hypothetical protein.	0.597
AMV24221.1	AMV24000.1	VT84_07475	VT84_06365	Hypothetical protein.	Hypothetical protein.	0.597
AMV24694.1	AMV26947.1	VT84_09885	VT84_21275	Hypothetical protein.	Hypothetical protein.	0.764
AMV24694.1	AMV27057.1	VT84_09885	VT84_21825	Hypothetical protein.	Hypothetical protein.	0.771
AMV24694.1	AMV28615.1	VT84_09885	VT84_29695	Hypothetical protein.	Hypothetical protein.	0.771