(51 nodes) Immunoglobulin-like fold network (Gemmata sp. SHPL17)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	glgX_3	Glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family. (819 aa)
	AMV26000.1	FG-GAP repeat protein. (777 aa)
	hlyA_2	Hemolysin, chromosomal. (2221 aa)
	AMV26188.1	Putative subtilase-type serine protease precursor. (821 aa)
	AMV26434.1	Hypothetical protein. (523 aa)
	AMV26471.1	Hypothetical protein; Aerotolerance regulator N-terminal. (962 aa)
	AMV26502.1	Hypothetical protein. (328 aa)
	omcB_2	Large cysteine-rich periplasmic protein OmcB precursor. (719 aa)
	AMV26785.1	Hypothetical protein; Aerotolerance regulator N-terminal. (1665 aa)
	glgB_1	1,4-alpha-glucan branching enzyme GlgB. (623 aa)
	AMV27190.1	Blue-light-activated protein. (1170 aa)
	uidA	Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (749 aa)
	AMV27319.1	Hypothetical protein. (535 aa)
	axe1-6A	Carbohydrate acetyl esterase/feruloyl esterase precursor. (593 aa)
	glgX_2	Glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family. (685 aa)
	AMV27856.1	Hypothetical protein. (278 aa)
	sigW_12	ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily. (823 aa)
	glgB_2	1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (657 aa)
	AMV28419.1	Hypothetical protein. (539 aa)
	sigE_47	ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. (941 aa)
	AMV28595.1	GDSL-like Lipase/Acylhydrolase. (734 aa)
	AMV28637.1	Hypothetical protein. (605 aa)
	AMV28837.1	Hypothetical protein. (735 aa)
	AMV28980.1	Hypothetical protein; Aerotolerance regulator N-terminal. (740 aa)
	AMV29020.1	Hypothetical protein. (389 aa)
	omcB_3	Large cysteine-rich periplasmic protein OmcB precursor. (578 aa)
	AMV29127.1	Hypothetical protein. (1168 aa)
	AMV30376.1	Peptidyl-prolyl cis-trans isomerase cyp18. (705 aa)
	AMV24328.1	Hypothetical protein. (154 aa)
	AMV24289.1	Putative subtilase-type serine protease precursor. (830 aa)
	sdrD_1	Serine-aspartate repeat-containing protein D precursor. (2316 aa)
	AMV24068.1	Calx-beta domain protein. (3237 aa)
	wapA_1	tRNA nuclease WapA precursor. (2727 aa)
	omcB_1	Large cysteine-rich periplasmic protein OmcB precursor. (779 aa)
	AMV23619.1	Hypothetical protein. (1129 aa)
	AMV23368.1	Calcineurin-like phosphoesterase. (630 aa)
	glgX_1	Glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family. (718 aa)
	AMV22985.1	Hypothetical protein. (517 aa)
	AMV22814.1	Hypothetical protein. (467 aa)
	AMV22811.1	Hypothetical protein. (1148 aa)
	AMV22806.1	Autotransporter-associated beta strand repeat protein. (1681 aa)
	AMV24503.1	Hypothetical protein. (367 aa)
	AMV24585.1	Fibronectin type III domain protein. (1626 aa)
	AMV24795.1	Translocation protein TolB. (1043 aa)
	AMV25064.1	PKD domain protein. (695 aa)
	AMV24402.1	Hypothetical protein. (600 aa)
	sdrD_2	Serine-aspartate repeat-containing protein D precursor. (321 aa)
	AMV25390.1	PKD domain protein. (436 aa)
	AMV25533.1	Fibronectin type III domain protein. (1626 aa)
	AMV25711.1	G8 domain protein. (702 aa)
	treZ	Malto-oligosyltrehalose trehalohydrolase. (625 aa)

Your Current Organism:

Gemmata sp. SHPL17

NCBI taxonomy Id: 1630693
Other names: G. sp. SH-PL17, Gemmata sp. SH-PL17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMV22806.1	AMV22811.1	VT84_00240	VT84_00265	Autotransporter-associated beta strand repeat protein.	Hypothetical protein.	0.575
AMV22806.1	AMV25390.1	VT84_00240	VT84_13395	Autotransporter-associated beta strand repeat protein.	PKD domain protein.	0.435
AMV22806.1	hlyA_2	VT84_00240	VT84_17410	Autotransporter-associated beta strand repeat protein.	Hemolysin, chromosomal.	0.527
AMV22811.1	AMV22806.1	VT84_00265	VT84_00240	Hypothetical protein.	Autotransporter-associated beta strand repeat protein.	0.575
AMV22811.1	AMV22814.1	VT84_00265	VT84_00280	Hypothetical protein.	Hypothetical protein.	0.440
AMV22811.1	AMV25064.1	VT84_00265	VT84_11755	Hypothetical protein.	PKD domain protein.	0.636
AMV22811.1	AMV25390.1	VT84_00265	VT84_13395	Hypothetical protein.	PKD domain protein.	0.815
AMV22811.1	AMV26471.1	VT84_00265	VT84_18880	Hypothetical protein.	Hypothetical protein; Aerotolerance regulator N-terminal.	0.655
AMV22811.1	AMV26785.1	VT84_00265	VT84_20465	Hypothetical protein.	Hypothetical protein; Aerotolerance regulator N-terminal.	0.615
AMV22811.1	AMV28637.1	VT84_00265	VT84_29805	Hypothetical protein.	Hypothetical protein.	0.530
AMV22811.1	hlyA_2	VT84_00265	VT84_17410	Hypothetical protein.	Hemolysin, chromosomal.	0.627
AMV22811.1	omcB_1	VT84_00265	VT84_04730	Hypothetical protein.	Large cysteine-rich periplasmic protein OmcB precursor.	0.583
AMV22811.1	omcB_3	VT84_00265	VT84_32210	Hypothetical protein.	Large cysteine-rich periplasmic protein OmcB precursor.	0.595
AMV22811.1	sdrD_1	VT84_00265	VT84_07650	Hypothetical protein.	Serine-aspartate repeat-containing protein D precursor.	0.401
AMV22814.1	AMV22811.1	VT84_00280	VT84_00265	Hypothetical protein.	Hypothetical protein.	0.440
AMV24068.1	hlyA_2	VT84_06705	VT84_17410	Calx-beta domain protein.	Hemolysin, chromosomal.	0.916
AMV24289.1	AMV25711.1	VT84_07825	VT84_15040	Putative subtilase-type serine protease precursor.	G8 domain protein.	0.502
AMV24289.1	AMV26471.1	VT84_07825	VT84_18880	Putative subtilase-type serine protease precursor.	Hypothetical protein; Aerotolerance regulator N-terminal.	0.401
AMV24289.1	AMV26785.1	VT84_07825	VT84_20465	Putative subtilase-type serine protease precursor.	Hypothetical protein; Aerotolerance regulator N-terminal.	0.436
AMV24289.1	AMV28595.1	VT84_07825	VT84_29595	Putative subtilase-type serine protease precursor.	GDSL-like Lipase/Acylhydrolase.	0.641