STRINGSTRING
KNX39060.1 KNX39060.1 KNX35975.1 KNX35975.1 KNX36016.1 KNX36016.1 KNX36018.1 KNX36018.1 KNX39097.1 KNX39097.1 KNX36077.1 KNX36077.1 whiB whiB KNX39109.1 KNX39109.1 KNX39131.1 KNX39131.1 KNX39157.1 KNX39157.1 rpoB rpoB rpoC rpoC rpoA rpoA KNX36460.1 KNX36460.1 KNX39172.1 KNX39172.1 KNX36513.1 KNX36513.1 KNX36553.1 KNX36553.1 KNX39193.1 KNX39193.1 KNX36582.1 KNX36582.1 KNX36583.1 KNX36583.1 KNX36668.1 KNX36668.1 KNX36725.1 KNX36725.1 rnj rnj KNX36778.1 KNX36778.1 sigA sigA KNX36898.1 KNX36898.1 KNX36902.1 KNX36902.1 KNX39274.1 KNX39274.1 KNX37046.1 KNX37046.1 KNX37104.1 KNX37104.1 KNX37109.1 KNX37109.1 rpoZ rpoZ KNX37309.1 KNX37309.1 KNX35894.1 KNX35894.1 KNX37366.1 KNX37366.1 dnaG dnaG KNX37423.1 KNX37423.1 rpmA rpmA KNX37593.1 KNX37593.1 KNX39398.1 KNX39398.1 KNX37644.1 KNX37644.1 KNX37723.1 KNX37723.1 KNX37838.1 KNX37838.1 KNX37842.1 KNX37842.1 dnaE2 dnaE2 KNX37926.1 KNX37926.1 KNX38038.1 KNX38038.1 KNX38061.1 KNX38061.1 KNX38063.1 KNX38063.1 KNX38079.1 KNX38079.1 KNX38086.1 KNX38086.1 KNX38090.1 KNX38090.1 KNX38158.1 KNX38158.1 KNX38170.1 KNX38170.1 KNX38171.1 KNX38171.1 KNX38176.1 KNX38176.1 KNX39523.1 KNX39523.1 KNX38243.1 KNX38243.1 KNX38257.1 KNX38257.1 KNX38259.1 KNX38259.1 KNX38314.1 KNX38314.1 KNX38379.1 KNX38379.1 KNX38495.1 KNX38495.1 KNX38522.1 KNX38522.1 KNX38589.1 KNX38589.1 KNX38597.1 KNX38597.1 KNX38614.1 KNX38614.1 KNX38637.1 KNX38637.1 KNX38643.1 KNX38643.1 KNX38667.1 KNX38667.1 KNX39588.1 KNX39588.1 KNX35929.1 KNX35929.1 KNX38752.1 KNX38752.1 KNX38783.1 KNX38783.1 KNX38793.1 KNX38793.1 KNX38801.1 KNX38801.1 KNX38843.1 KNX38843.1 KNX38882.1 KNX38882.1 KNX38894.1 KNX38894.1 KNX39638.1 KNX39638.1 KNX38975.1 KNX38975.1 KNX39025.1 KNX39025.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KNX39060.1RNA polymerase sigma24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (301 aa)
KNX35975.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX36016.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (178 aa)
KNX36018.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
KNX39097.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX36077.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
whiBTranscription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (94 aa)
KNX39109.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
KNX39131.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (444 aa)
KNX39157.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (162 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1161 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1295 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (346 aa)
KNX36460.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
KNX39172.1RNA polymerase sigma factor SigK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
KNX36513.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (219 aa)
KNX36553.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX39193.1RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (218 aa)
KNX36582.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
KNX36583.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
KNX36668.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (400 aa)
KNX36725.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
rnjRibonuclease; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (560 aa)
KNX36778.1Sigma-70 region 4 type 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
sigAHypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (507 aa)
KNX36898.1DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1191 aa)
KNX36902.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX39274.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (165 aa)
KNX37046.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX37104.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
KNX37109.1RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (294 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (87 aa)
KNX37309.1RNA polymerase sigma24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (299 aa)
KNX35894.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX37366.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (634 aa)
KNX37423.1Deoxyguanosinetriphosphate triphosphohydrolase; dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
rpmA50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL27 family. (93 aa)
KNX37593.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX39398.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
KNX37644.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (420 aa)
KNX37723.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (166 aa)
KNX37838.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX37842.1RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (324 aa)
dnaE2DNA polymerase III subunit alpha; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1142 aa)
KNX37926.1RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (205 aa)
KNX38038.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX38061.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
KNX38063.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
KNX38079.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
KNX38086.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX38090.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX38158.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
KNX38170.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX38171.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
KNX38176.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX39523.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
KNX38243.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX38257.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX38259.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (302 aa)
KNX38314.1ECF subfamily RNA polymerase sigma-24 subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (416 aa)
KNX38379.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX38495.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)
KNX38522.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (411 aa)
KNX38589.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
KNX38597.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
KNX38614.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX38637.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
KNX38643.1RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (289 aa)
KNX38667.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
KNX39588.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (262 aa)
KNX35929.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
KNX38752.1Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in Mycobacterium bovis this protein has been shown to be active at high temperatures and during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
KNX38783.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
KNX38793.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
KNX38801.1Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
KNX38843.1RNA polymerase sigma24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (381 aa)
KNX38882.1RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
KNX38894.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
KNX39638.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (414 aa)
KNX38975.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
KNX39025.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
Your Current Organism:
Luteipulveratus halotolerans
NCBI taxonomy Id: 1631356
Other names: ATCC TSD-4, JCM 30660, L. halotolerans, Luteipulveratus halotolerans Juboi et al. 2015, Luteipulveratus sp. C296001, strain C296001
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