(35 nodes) Mixed, incl. Type II secretion system (T2SS), protein F, and Regulation of cell killing network (Planctomyces sp. SHPL14)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMV16909.1	Hypothetical protein. (110 aa)
	AMV17133.1	Type IV leader peptidase family protein. (183 aa)
	AMV17134.1	Hypothetical protein. (363 aa)
	outD_1	Type II secretion system protein D precursor; Belongs to the bacterial secretin family. (631 aa)
	minD	Septum site-determining protein MinD. (402 aa)
	AMV17300.1	Hypothetical protein. (104 aa)
	AMV18510.1	Bacterial type II secretion system protein F domain protein. (304 aa)
	AMV18839.1	Type IV leader peptidase family protein. (195 aa)
	AMV18841.1	Hypothetical protein. (366 aa)
	AMV18843.1	Putative conjugal transfer protein. (440 aa)
	AMV18844.1	Bacterial type II secretion system protein F domain protein. (282 aa)
	AMV18845.1	Bacterial type II secretion system protein F domain protein. (398 aa)
	outD_2	Type II secretion system protein D precursor; Belongs to the bacterial secretin family. (737 aa)
	AMV20076.1	Hypothetical protein. (497 aa)
	AMV20077.1	Hypothetical protein. (153 aa)
	AMV20078.1	TadE-like protein. (143 aa)
	AMV20079.1	Bacterial type II secretion system protein F domain protein. (321 aa)
	AMV20080.1	Bacterial type II secretion system protein F domain protein. (310 aa)
	AMV20081.1	Putative conjugal transfer protein. (462 aa)
	AMV20082.1	Hypothetical protein. (423 aa)
	AMV20303.1	Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family. (624 aa)
	AMV20991.1	Hypothetical protein. (390 aa)
	AMV20992.1	TadE-like protein. (170 aa)
	AMV21063.1	TadE-like protein. (165 aa)
	AMV21064.1	TadE-like protein. (144 aa)
	AMV22089.1	Type IV pilin biogenesis protein. (281 aa)
	AMV22111.1	Hypothetical protein. (110 aa)
	AMV22136.1	Putative conjugal transfer protein. (644 aa)
	AMV22203.1	Putative conjugal transfer protein. (449 aa)
	AMV22204.1	Bacterial type II secretion system protein F domain protein. (322 aa)
	AMV22205.1	Bacterial type II secretion system protein F domain protein. (308 aa)
	AMV22506.1	Bacterial type II secretion system protein F domain protein. (301 aa)
	AMV22507.1	Bacterial type II secretion system protein F domain protein. (283 aa)
	AMV22508.1	Putative conjugal transfer protein. (656 aa)
	ptlH_3	Type IV secretion system protein PtlH. (374 aa)

Your Current Organism:

Planctomyces sp. SHPL14

NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMV16909.1	AMV17134.1	VT03_03400	VT03_04535	Hypothetical protein.	Hypothetical protein.	0.659
AMV16909.1	AMV18841.1	VT03_03400	VT03_13205	Hypothetical protein.	Hypothetical protein.	0.659
AMV16909.1	AMV20082.1	VT03_03400	VT03_19460	Hypothetical protein.	Hypothetical protein.	0.563
AMV16909.1	minD	VT03_03400	VT03_04545	Hypothetical protein.	Septum site-determining protein MinD.	0.563
AMV17133.1	AMV17134.1	VT03_04530	VT03_04535	Type IV leader peptidase family protein.	Hypothetical protein.	0.957
AMV17133.1	AMV17300.1	VT03_04530	VT03_05370	Type IV leader peptidase family protein.	Hypothetical protein.	0.679
AMV17133.1	AMV18510.1	VT03_04530	VT03_11505	Type IV leader peptidase family protein.	Bacterial type II secretion system protein F domain protein.	0.714
AMV17133.1	AMV18841.1	VT03_04530	VT03_13205	Type IV leader peptidase family protein.	Hypothetical protein.	0.735
AMV17133.1	AMV18843.1	VT03_04530	VT03_13215	Type IV leader peptidase family protein.	Putative conjugal transfer protein.	0.570
AMV17133.1	AMV18844.1	VT03_04530	VT03_13220	Type IV leader peptidase family protein.	Bacterial type II secretion system protein F domain protein.	0.781
AMV17133.1	AMV18845.1	VT03_04530	VT03_13225	Type IV leader peptidase family protein.	Bacterial type II secretion system protein F domain protein.	0.668
AMV17133.1	AMV20079.1	VT03_04530	VT03_19445	Type IV leader peptidase family protein.	Bacterial type II secretion system protein F domain protein.	0.676
AMV17133.1	AMV20080.1	VT03_04530	VT03_19450	Type IV leader peptidase family protein.	Bacterial type II secretion system protein F domain protein.	0.785
AMV17133.1	AMV20081.1	VT03_04530	VT03_19455	Type IV leader peptidase family protein.	Putative conjugal transfer protein.	0.569
AMV17133.1	AMV20082.1	VT03_04530	VT03_19460	Type IV leader peptidase family protein.	Hypothetical protein.	0.794
AMV17133.1	AMV20303.1	VT03_04530	VT03_20565	Type IV leader peptidase family protein.	Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.	0.600
AMV17133.1	AMV20991.1	VT03_04530	VT03_24020	Type IV leader peptidase family protein.	Hypothetical protein.	0.516
AMV17133.1	AMV20992.1	VT03_04530	VT03_24025	Type IV leader peptidase family protein.	TadE-like protein.	0.760
AMV17133.1	AMV22089.1	VT03_04530	VT03_29570	Type IV leader peptidase family protein.	Type IV pilin biogenesis protein.	0.746
AMV17133.1	AMV22136.1	VT03_04530	VT03_29805	Type IV leader peptidase family protein.	Putative conjugal transfer protein.	0.495