STRINGSTRING
rlmI_2 rlmI_2 rsmE rsmE nusB nusB fmt fmt AMV32878.1 AMV32878.1 rimO rimO rsmF rsmF rlmN_2 rlmN_2 rluD_5 rluD_5 AMV34132.1 AMV34132.1 prkC_15 prkC_15
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rlmI_2Ribosomal RNA large subunit methyltransferase I. (403 aa)
rsmERibosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (254 aa)
nusBHypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (156 aa)
fmtMethionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (354 aa)
AMV32878.1CAAX amino terminal protease self- immunity. (355 aa)
rimORibosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (474 aa)
rsmFRibosomal RNA small subunit methyltransferase F; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (471 aa)
rlmN_2Putative dual-specificity RNA methyltransferase RlmN; Belongs to the radical SAM superfamily. RlmN family. (348 aa)
rluD_5Ribosomal large subunit pseudouridine synthase D. (313 aa)
AMV34132.1Planctomycete cytochrome C. (661 aa)
prkC_15Serine/threonine-protein kinase PrkC. (607 aa)
Your Current Organism:
Pirellula sp. SHSr6A
NCBI taxonomy Id: 1632865
Other names: P. sp. SH-Sr6A, Pirellula sp. SH-Sr6A
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