Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMV30626.1 | AMV33077.1 | VN12_00825 | VN12_13210 | Hypothetical protein; NfeD-like C-terminal, partner-binding. | Hypothetical protein; NfeD-like C-terminal, partner-binding. | 0.637 |
| AMV30823.1 | ligA | VN12_01815 | VN12_01370 | Putative DNA ligase-like protein. | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.912 |
| AMV33077.1 | AMV30626.1 | VN12_13210 | VN12_00825 | Hypothetical protein; NfeD-like C-terminal, partner-binding. | Hypothetical protein; NfeD-like C-terminal, partner-binding. | 0.637 |
| AMV33247.1 | infA | VN12_14060 | VN12_17400 | Cold shock-like protein CspC. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.406 |
| AMV33247.1 | rplB | VN12_14060 | VN12_20325 | Cold shock-like protein CspC. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.523 |
| AMV33247.1 | rpsL | VN12_14060 | VN12_09910 | Cold shock-like protein CspC. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.704 |
| AMV33247.1 | rpsQ | VN12_14060 | VN12_20295 | Cold shock-like protein CspC. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.681 |
| AMV35023.1 | efp | VN12_23050 | VN12_16975 | 30S ribosomal protein S1 homolog. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.541 |
| AMV35023.1 | infA | VN12_23050 | VN12_17400 | 30S ribosomal protein S1 homolog. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.414 |
| AMV35023.1 | lysS | VN12_23050 | VN12_03305 | 30S ribosomal protein S1 homolog. | Lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.473 |
| AMV35023.1 | metG | VN12_23050 | VN12_14180 | 30S ribosomal protein S1 homolog. | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.504 |
| AMV35023.1 | nusA | VN12_23050 | VN12_13055 | 30S ribosomal protein S1 homolog. | Hypothetical protein; Participates in both transcription termination and antitermination. | 0.793 |
| AMV35023.1 | pnp | VN12_23050 | VN12_23210 | 30S ribosomal protein S1 homolog. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.666 |
| AMV35023.1 | rho | VN12_23050 | VN12_07670 | 30S ribosomal protein S1 homolog. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.568 |
| AMV35023.1 | rho-2 | VN12_23050 | VN12_10795 | 30S ribosomal protein S1 homolog. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.568 |
| AMV35023.1 | rnr | VN12_23050 | VN12_08805 | 30S ribosomal protein S1 homolog. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.465 |
| AMV35023.1 | rplB | VN12_23050 | VN12_20325 | 30S ribosomal protein S1 homolog. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.966 |
| AMV35023.1 | rpsA_1 | VN12_23050 | VN12_17930 | 30S ribosomal protein S1 homolog. | 30S ribosomal protein S1. | 0.923 |
| AMV35023.1 | rpsL | VN12_23050 | VN12_09910 | 30S ribosomal protein S1 homolog. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.983 |
| AMV35023.1 | rpsQ | VN12_23050 | VN12_20295 | 30S ribosomal protein S1 homolog. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.975 |
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