(9 nodes) RNA-binding domain, S1 network (Pirellula sp. SHSr6A)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rnr	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (779 aa)
	rne	Ribonuclease E. (559 aa)
	pnp	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (813 aa)
	AMV35023.1	30S ribosomal protein S1 homolog. (531 aa)
	rpsA_2	30S ribosomal protein S1. (727 aa)
	yugI	General stress protein 13. (1171 aa)
	rpsA_1	30S ribosomal protein S1. (597 aa)
	infA	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (73 aa)
	nusA	Hypothetical protein; Participates in both transcription termination and antitermination. (451 aa)

Your Current Organism:

Pirellula sp. SHSr6A

NCBI taxonomy Id: 1632865
Other names: P. sp. SH-Sr6A, Pirellula sp. SH-Sr6A

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMV35023.1	infA	VN12_23050	VN12_17400	30S ribosomal protein S1 homolog.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.414
AMV35023.1	nusA	VN12_23050	VN12_13055	30S ribosomal protein S1 homolog.	Hypothetical protein; Participates in both transcription termination and antitermination.	0.793
AMV35023.1	pnp	VN12_23050	VN12_23210	30S ribosomal protein S1 homolog.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.666
AMV35023.1	rnr	VN12_23050	VN12_08805	30S ribosomal protein S1 homolog.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.465
AMV35023.1	rpsA_1	VN12_23050	VN12_17930	30S ribosomal protein S1 homolog.	30S ribosomal protein S1.	0.923
infA	AMV35023.1	VN12_17400	VN12_23050	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	30S ribosomal protein S1 homolog.	0.414
infA	pnp	VN12_17400	VN12_23210	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.401
nusA	AMV35023.1	VN12_13055	VN12_23050	Hypothetical protein; Participates in both transcription termination and antitermination.	30S ribosomal protein S1 homolog.	0.793
nusA	pnp	VN12_13055	VN12_23210	Hypothetical protein; Participates in both transcription termination and antitermination.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.903
nusA	rpsA_1	VN12_13055	VN12_17930	Hypothetical protein; Participates in both transcription termination and antitermination.	30S ribosomal protein S1.	0.825
pnp	AMV35023.1	VN12_23210	VN12_23050	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	30S ribosomal protein S1 homolog.	0.666
pnp	infA	VN12_23210	VN12_17400	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.401
pnp	nusA	VN12_23210	VN12_13055	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Hypothetical protein; Participates in both transcription termination and antitermination.	0.903
pnp	rne	VN12_23210	VN12_10745	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribonuclease E.	0.981
pnp	rnr	VN12_23210	VN12_08805	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.717
pnp	rpsA_1	VN12_23210	VN12_17930	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	30S ribosomal protein S1.	0.658
rne	pnp	VN12_10745	VN12_23210	Ribonuclease E.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.981
rne	rnr	VN12_10745	VN12_08805	Ribonuclease E.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.736
rne	rpsA_1	VN12_10745	VN12_17930	Ribonuclease E.	30S ribosomal protein S1.	0.477
rnr	AMV35023.1	VN12_08805	VN12_23050	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	30S ribosomal protein S1 homolog.	0.465