(5 nodes) Mixed, incl. Double-strand break repair, and Receptor network (Planctomyces sp. SHPL62)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	recO	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (247 aa)
	corC_2	Magnesium and cobalt efflux protein CorC. (430 aa)
	ybeY	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (176 aa)
	AMV36714.1	7TM receptor with intracellular HD hydrolase. (746 aa)
	ybeZ	PhoH-like protein. (338 aa)

Your Current Organism:

Planctomyces sp. SHPL62

NCBI taxonomy Id: 1636152
Other names: P. sp. SH-PL62, Planctomyces sp. SH-PL62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMV36714.1	corC_2	VT85_04740	VT85_04730	7TM receptor with intracellular HD hydrolase.	Magnesium and cobalt efflux protein CorC.	0.695
AMV36714.1	recO	VT85_04740	VT85_04725	7TM receptor with intracellular HD hydrolase.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.543
AMV36714.1	ybeY	VT85_04740	VT85_04735	7TM receptor with intracellular HD hydrolase.	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.859
AMV36714.1	ybeZ	VT85_04740	VT85_04745	7TM receptor with intracellular HD hydrolase.	PhoH-like protein.	0.564
corC_2	AMV36714.1	VT85_04730	VT85_04740	Magnesium and cobalt efflux protein CorC.	7TM receptor with intracellular HD hydrolase.	0.695
corC_2	recO	VT85_04730	VT85_04725	Magnesium and cobalt efflux protein CorC.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.490
corC_2	ybeY	VT85_04730	VT85_04735	Magnesium and cobalt efflux protein CorC.	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.777
corC_2	ybeZ	VT85_04730	VT85_04745	Magnesium and cobalt efflux protein CorC.	PhoH-like protein.	0.555
recO	AMV36714.1	VT85_04725	VT85_04740	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	7TM receptor with intracellular HD hydrolase.	0.543
recO	corC_2	VT85_04725	VT85_04730	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	Magnesium and cobalt efflux protein CorC.	0.490
recO	ybeY	VT85_04725	VT85_04735	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.569
recO	ybeZ	VT85_04725	VT85_04745	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	PhoH-like protein.	0.808
ybeY	AMV36714.1	VT85_04735	VT85_04740	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	7TM receptor with intracellular HD hydrolase.	0.859
ybeY	corC_2	VT85_04735	VT85_04730	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	Magnesium and cobalt efflux protein CorC.	0.777
ybeY	recO	VT85_04735	VT85_04725	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.569
ybeY	ybeZ	VT85_04735	VT85_04745	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	PhoH-like protein.	0.943
ybeZ	AMV36714.1	VT85_04745	VT85_04740	PhoH-like protein.	7TM receptor with intracellular HD hydrolase.	0.564
ybeZ	corC_2	VT85_04745	VT85_04730	PhoH-like protein.	Magnesium and cobalt efflux protein CorC.	0.555
ybeZ	recO	VT85_04745	VT85_04725	PhoH-like protein.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.808
ybeZ	ybeY	VT85_04745	VT85_04735	PhoH-like protein.	Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.943