STRINGSTRING
AMV36405.1 AMV36405.1 nth_1 nth_1 AMV37275.1 AMV37275.1 ligA ligA pdg pdg nth_2 nth_2 mutM mutM AMV38271.1 AMV38271.1 AMV38310.1 AMV38310.1 AMV38440.1 AMV38440.1 yfhQ yfhQ alkA_1 alkA_1 polA_1 polA_1 recJ recJ nfo_2 nfo_2 xthA xthA alkA_2 alkA_2 tag tag polA_2 polA_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMV36405.1Uracil DNA glycosylase superfamily protein. (218 aa)
nth_1Endonuclease III. (249 aa)
AMV37275.1Uracil DNA glycosylase superfamily protein. (326 aa)
ligADNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (673 aa)
pdgUltraviolet N-glycosylase/AP lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (223 aa)
nth_2Endonuclease III. (229 aa)
mutMFormamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (286 aa)
AMV38271.1ATP-dependent DNA ligase. (532 aa)
AMV38310.13-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. (184 aa)
AMV38440.1Uracil DNA glycosylase superfamily protein. (223 aa)
yfhQPutative A/G-specific adenine glycosylase YfhQ; Adenine glycosylase active on G-A mispairs. (381 aa)
alkA_1DNA-3-methyladenine glycosylase. (207 aa)
polA_1DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (902 aa)
recJSingle-stranded-DNA-specific exonuclease RecJ. (591 aa)
nfo_2Endonuclease 4; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (287 aa)
xthAExodeoxyribonuclease III. (256 aa)
alkA_2DNA-3-methyladenine glycosylase 2. (486 aa)
tagDNA-3-methyladenine glycosylase 1. (187 aa)
polA_2DNA polymerase I, thermostable. (620 aa)
Your Current Organism:
Planctomyces sp. SHPL62
NCBI taxonomy Id: 1636152
Other names: P. sp. SH-PL62, Planctomyces sp. SH-PL62
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