(42 nodes) Mixed, incl. RAB geranylgeranylation, and VPS9 domain superfamily network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G607_PHYRM	Uncharacterized protein. (927 aa)
	H3G609_PHYRM	Uncharacterized protein. (720 aa)
	H3G613_PHYRM	Uncharacterized protein. (166 aa)
	H3G700_PHYRM	Uncharacterized protein. (560 aa)
	H3G713_PHYRM	Uncharacterized protein. (311 aa)
	H3G7R1_PHYRM	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (523 aa)
	H3G7Y9_PHYRM	Uncharacterized protein. (577 aa)
	H3G8G7_PHYRM	Uncharacterized protein. (200 aa)
	H3G8R1_PHYRM	Uncharacterized protein. (142 aa)
	H3G9H4_PHYRM	Uncharacterized protein. (152 aa)
	H3G9M6_PHYRM	Uncharacterized protein. (197 aa)
	H3GC16_PHYRM	VPS9 domain-containing protein. (643 aa)
	H3GC61_PHYRM	Ysc84 domain-containing protein. (342 aa)
	H3GDB0_PHYRM	Uncharacterized protein. (875 aa)
	H3GE06_PHYRM	Rab-GAP TBC domain-containing protein. (359 aa)
	H3GF34_PHYRM	Uncharacterized protein. (320 aa)
	H3GGP8_PHYRM	Uncharacterized protein. (679 aa)
	H3GIE7_PHYRM	Uncharacterized protein. (352 aa)
	H3GLF1_PHYRM	Uncharacterized protein. (414 aa)
	H3GMX1_PHYRM	FYVE-type domain-containing protein. (666 aa)
	H3GMX2_PHYRM	FYVE-type domain-containing protein. (659 aa)
	H3GPL4_PHYRM	Rab-GAP TBC domain-containing protein. (583 aa)
	H3GQB2_PHYRM	Uncharacterized protein. (428 aa)
	H3GUD2_PHYRM	Uncharacterized protein. (2129 aa)
	H3GUK2_PHYRM	AN1-type domain-containing protein. (219 aa)
	H3GX20_PHYRM	VPS9 domain-containing protein. (684 aa)
	H3GXL1_PHYRM	Uncharacterized protein. (818 aa)
	H3GYQ8_PHYRM	Uncharacterized protein. (224 aa)
	H3H063_PHYRM	Uncharacterized protein. (1096 aa)
	H3H1T7_PHYRM	Uncharacterized protein. (574 aa)
	H3H2C4_PHYRM	VPS9 domain-containing protein. (672 aa)
	H3H2V9_PHYRM	Uncharacterized protein. (527 aa)
	H3H3A6_PHYRM	VPS9 domain-containing protein. (578 aa)
	H3H4C8_PHYRM	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (623 aa)
	H3H926_PHYRM	Uncharacterized protein. (160 aa)
	H3H9E0_PHYRM	Uncharacterized protein. (137 aa)
	H3HAQ4_PHYRM	Uncharacterized protein. (218 aa)
	H3HBM9_PHYRM	Uncharacterized protein. (201 aa)
	H3HBQ2_PHYRM	Uncharacterized protein. (548 aa)
	H3HBR7_PHYRM	Uncharacterized protein. (814 aa)
	H3HCD9_PHYRM	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (345 aa)
	H3HCR9_PHYRM	Uncharacterized protein. (119 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G607_PHYRM	H3G7R1_PHYRM	H3G607	H3G7R1	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.414
H3G607_PHYRM	H3H063_PHYRM	H3G607	H3H063	Uncharacterized protein.	Uncharacterized protein.	0.512
H3G607_PHYRM	H3H1T7_PHYRM	H3G607	H3H1T7	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G607_PHYRM	H3H2V9_PHYRM	H3G607	H3H2V9	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G607_PHYRM	H3H9E0_PHYRM	H3G607	H3H9E0	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G607_PHYRM	H3HBR7_PHYRM	H3G607	H3HBR7	Uncharacterized protein.	Uncharacterized protein.	0.403
H3G609_PHYRM	H3G7R1_PHYRM	H3G609	H3G7R1	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.414
H3G609_PHYRM	H3H063_PHYRM	H3G609	H3H063	Uncharacterized protein.	Uncharacterized protein.	0.512
H3G609_PHYRM	H3H1T7_PHYRM	H3G609	H3H1T7	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G609_PHYRM	H3H2V9_PHYRM	H3G609	H3H2V9	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G609_PHYRM	H3H9E0_PHYRM	H3G609	H3H9E0	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G609_PHYRM	H3HBR7_PHYRM	H3G609	H3HBR7	Uncharacterized protein.	Uncharacterized protein.	0.403
H3G613_PHYRM	H3G8G7_PHYRM	H3G613	H3G8G7	Uncharacterized protein.	Uncharacterized protein.	0.609
H3G613_PHYRM	H3G9M6_PHYRM	H3G613	H3G9M6	Uncharacterized protein.	Uncharacterized protein.	0.610
H3G613_PHYRM	H3GF34_PHYRM	H3G613	H3GF34	Uncharacterized protein.	Uncharacterized protein.	0.708
H3G613_PHYRM	H3GGP8_PHYRM	H3G613	H3GGP8	Uncharacterized protein.	Uncharacterized protein.	0.750
H3G613_PHYRM	H3GQB2_PHYRM	H3G613	H3GQB2	Uncharacterized protein.	Uncharacterized protein.	0.803
H3G613_PHYRM	H3GYQ8_PHYRM	H3G613	H3GYQ8	Uncharacterized protein.	Uncharacterized protein.	0.584
H3G613_PHYRM	H3HBM9_PHYRM	H3G613	H3HBM9	Uncharacterized protein.	Uncharacterized protein.	0.447
H3G613_PHYRM	H3HCD9_PHYRM	H3G613	H3HCD9	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.689

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