(26 nodes) VPS9 domain superfamily, and RAB geranylgeranylation network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G613_PHYRM	Uncharacterized protein. (166 aa)
	H3G713_PHYRM	Uncharacterized protein. (311 aa)
	H3G8R1_PHYRM	Uncharacterized protein. (142 aa)
	H3G9H4_PHYRM	Uncharacterized protein. (152 aa)
	H3G9M6_PHYRM	Uncharacterized protein. (197 aa)
	H3GC16_PHYRM	VPS9 domain-containing protein. (643 aa)
	H3GC61_PHYRM	Ysc84 domain-containing protein. (342 aa)
	H3GDB0_PHYRM	Uncharacterized protein. (875 aa)
	H3GE06_PHYRM	Rab-GAP TBC domain-containing protein. (359 aa)
	H3GF34_PHYRM	Uncharacterized protein. (320 aa)
	H3GGP8_PHYRM	Uncharacterized protein. (679 aa)
	H3GIE7_PHYRM	Uncharacterized protein. (352 aa)
	H3GLF1_PHYRM	Uncharacterized protein. (414 aa)
	H3GPL4_PHYRM	Rab-GAP TBC domain-containing protein. (583 aa)
	H3GQB2_PHYRM	Uncharacterized protein. (428 aa)
	H3GUK2_PHYRM	AN1-type domain-containing protein. (219 aa)
	H3GX20_PHYRM	VPS9 domain-containing protein. (684 aa)
	H3GXL1_PHYRM	Uncharacterized protein. (818 aa)
	H3GYQ8_PHYRM	Uncharacterized protein. (224 aa)
	H3H2C4_PHYRM	VPS9 domain-containing protein. (672 aa)
	H3H3A6_PHYRM	VPS9 domain-containing protein. (578 aa)
	H3H926_PHYRM	Uncharacterized protein. (160 aa)
	H3HAQ4_PHYRM	Uncharacterized protein. (218 aa)
	H3HBM9_PHYRM	Uncharacterized protein. (201 aa)
	H3HBQ2_PHYRM	Uncharacterized protein. (548 aa)
	H3HCD9_PHYRM	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (345 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G613_PHYRM	H3G9M6_PHYRM	H3G613	H3G9M6	Uncharacterized protein.	Uncharacterized protein.	0.610
H3G613_PHYRM	H3GF34_PHYRM	H3G613	H3GF34	Uncharacterized protein.	Uncharacterized protein.	0.708
H3G613_PHYRM	H3GGP8_PHYRM	H3G613	H3GGP8	Uncharacterized protein.	Uncharacterized protein.	0.750
H3G613_PHYRM	H3GQB2_PHYRM	H3G613	H3GQB2	Uncharacterized protein.	Uncharacterized protein.	0.803
H3G613_PHYRM	H3GYQ8_PHYRM	H3G613	H3GYQ8	Uncharacterized protein.	Uncharacterized protein.	0.584
H3G613_PHYRM	H3HBM9_PHYRM	H3G613	H3HBM9	Uncharacterized protein.	Uncharacterized protein.	0.447
H3G613_PHYRM	H3HCD9_PHYRM	H3G613	H3HCD9	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.689
H3G713_PHYRM	H3G9M6_PHYRM	H3G713	H3G9M6	Uncharacterized protein.	Uncharacterized protein.	0.835
H3G713_PHYRM	H3GC16_PHYRM	H3G713	H3GC16	Uncharacterized protein.	VPS9 domain-containing protein.	0.508
H3G713_PHYRM	H3GDB0_PHYRM	H3G713	H3GDB0	Uncharacterized protein.	Uncharacterized protein.	0.508
H3G713_PHYRM	H3GE06_PHYRM	H3G713	H3GE06	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.479
H3G713_PHYRM	H3GGP8_PHYRM	H3G713	H3GGP8	Uncharacterized protein.	Uncharacterized protein.	0.500
H3G713_PHYRM	H3GPL4_PHYRM	H3G713	H3GPL4	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.479
H3G713_PHYRM	H3GXL1_PHYRM	H3G713	H3GXL1	Uncharacterized protein.	Uncharacterized protein.	0.508
H3G713_PHYRM	H3GYQ8_PHYRM	H3G713	H3GYQ8	Uncharacterized protein.	Uncharacterized protein.	0.629
H3G8R1_PHYRM	H3G9M6_PHYRM	H3G8R1	H3G9M6	Uncharacterized protein.	Uncharacterized protein.	0.775
H3G8R1_PHYRM	H3GC16_PHYRM	H3G8R1	H3GC16	Uncharacterized protein.	VPS9 domain-containing protein.	0.406
H3G8R1_PHYRM	H3GDB0_PHYRM	H3G8R1	H3GDB0	Uncharacterized protein.	Uncharacterized protein.	0.406
H3G8R1_PHYRM	H3GGP8_PHYRM	H3G8R1	H3GGP8	Uncharacterized protein.	Uncharacterized protein.	0.486
H3G8R1_PHYRM	H3GXL1_PHYRM	H3G8R1	H3GXL1	Uncharacterized protein.	Uncharacterized protein.	0.406

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