(16 nodes) Mixed, incl. Dynamin family, and BEACH domain network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G607_PHYRM	Uncharacterized protein. (927 aa)
	H3G609_PHYRM	Uncharacterized protein. (720 aa)
	H3G700_PHYRM	Uncharacterized protein. (560 aa)
	H3G7R1_PHYRM	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (523 aa)
	H3G7Y9_PHYRM	Uncharacterized protein. (577 aa)
	H3G8G7_PHYRM	Uncharacterized protein. (200 aa)
	H3GMX1_PHYRM	FYVE-type domain-containing protein. (666 aa)
	H3GMX2_PHYRM	FYVE-type domain-containing protein. (659 aa)
	H3GUD2_PHYRM	Uncharacterized protein. (2129 aa)
	H3H063_PHYRM	Uncharacterized protein. (1096 aa)
	H3H1T7_PHYRM	Uncharacterized protein. (574 aa)
	H3H2V9_PHYRM	Uncharacterized protein. (527 aa)
	H3H4C8_PHYRM	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (623 aa)
	H3H9E0_PHYRM	Uncharacterized protein. (137 aa)
	H3HBR7_PHYRM	Uncharacterized protein. (814 aa)
	H3HCR9_PHYRM	Uncharacterized protein. (119 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G607_PHYRM	H3G7R1_PHYRM	H3G607	H3G7R1	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.414
H3G607_PHYRM	H3H063_PHYRM	H3G607	H3H063	Uncharacterized protein.	Uncharacterized protein.	0.512
H3G607_PHYRM	H3H1T7_PHYRM	H3G607	H3H1T7	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G607_PHYRM	H3H2V9_PHYRM	H3G607	H3H2V9	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G607_PHYRM	H3H9E0_PHYRM	H3G607	H3H9E0	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G607_PHYRM	H3HBR7_PHYRM	H3G607	H3HBR7	Uncharacterized protein.	Uncharacterized protein.	0.403
H3G609_PHYRM	H3G7R1_PHYRM	H3G609	H3G7R1	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.414
H3G609_PHYRM	H3H063_PHYRM	H3G609	H3H063	Uncharacterized protein.	Uncharacterized protein.	0.512
H3G609_PHYRM	H3H1T7_PHYRM	H3G609	H3H1T7	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G609_PHYRM	H3H2V9_PHYRM	H3G609	H3H2V9	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G609_PHYRM	H3H9E0_PHYRM	H3G609	H3H9E0	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G609_PHYRM	H3HBR7_PHYRM	H3G609	H3HBR7	Uncharacterized protein.	Uncharacterized protein.	0.403
H3G700_PHYRM	H3G7R1_PHYRM	H3G700	H3G7R1	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.414
H3G700_PHYRM	H3H063_PHYRM	H3G700	H3H063	Uncharacterized protein.	Uncharacterized protein.	0.512
H3G700_PHYRM	H3H1T7_PHYRM	H3G700	H3H1T7	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G700_PHYRM	H3H2V9_PHYRM	H3G700	H3H2V9	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G700_PHYRM	H3H9E0_PHYRM	H3G700	H3H9E0	Uncharacterized protein.	Uncharacterized protein.	0.414
H3G700_PHYRM	H3HBR7_PHYRM	H3G700	H3HBR7	Uncharacterized protein.	Uncharacterized protein.	0.403
H3G7R1_PHYRM	H3G607_PHYRM	H3G7R1	H3G607	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein.	0.414
H3G7R1_PHYRM	H3G609_PHYRM	H3G7R1	H3G609	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein.	0.414

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