(11 nodes) HDR through Single Strand Annealing (SSA), and Checkpoint clamp complex network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G6X5_PHYRM	Uncharacterized protein. (352 aa)
	H3G8Y8_PHYRM	Uncharacterized protein; Belongs to the RecA family. (447 aa)
	H3GCB9_PHYRM	Replication protein A subunit. (622 aa)
	H3GED1_PHYRM	Uncharacterized protein. (332 aa)
	H3GRD9_PHYRM	Uncharacterized protein. (290 aa)
	H3GV41_PHYRM	Uncharacterized protein. (1110 aa)
	H3H3X3_PHYRM	Checkpoint protein; Belongs to the HUS1 family. (289 aa)
	H3H5N9_PHYRM	Uncharacterized protein. (408 aa)
	H3H7K0_PHYRM	3'-5' exonuclease domain-containing protein. (278 aa)
	H3HCX3_PHYRM	Uncharacterized protein. (381 aa)
	H3HDP1_PHYRM	Uncharacterized protein. (226 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G6X5_PHYRM	H3G8Y8_PHYRM	H3G6X5	H3G8Y8	Uncharacterized protein.	Uncharacterized protein; Belongs to the RecA family.	0.624
H3G6X5_PHYRM	H3GCB9_PHYRM	H3G6X5	H3GCB9	Uncharacterized protein.	Replication protein A subunit.	0.938
H3G6X5_PHYRM	H3GED1_PHYRM	H3G6X5	H3GED1	Uncharacterized protein.	Uncharacterized protein.	0.590
H3G6X5_PHYRM	H3GRD9_PHYRM	H3G6X5	H3GRD9	Uncharacterized protein.	Uncharacterized protein.	0.773
H3G6X5_PHYRM	H3GV41_PHYRM	H3G6X5	H3GV41	Uncharacterized protein.	Uncharacterized protein.	0.797
H3G6X5_PHYRM	H3H3X3_PHYRM	H3G6X5	H3H3X3	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.644
H3G6X5_PHYRM	H3H5N9_PHYRM	H3G6X5	H3H5N9	Uncharacterized protein.	Uncharacterized protein.	0.851
H3G6X5_PHYRM	H3H7K0_PHYRM	H3G6X5	H3H7K0	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.699
H3G6X5_PHYRM	H3HCX3_PHYRM	H3G6X5	H3HCX3	Uncharacterized protein.	Uncharacterized protein.	0.750
H3G6X5_PHYRM	H3HDP1_PHYRM	H3G6X5	H3HDP1	Uncharacterized protein.	Uncharacterized protein.	0.777
H3G8Y8_PHYRM	H3G6X5_PHYRM	H3G8Y8	H3G6X5	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.624
H3G8Y8_PHYRM	H3GCB9_PHYRM	H3G8Y8	H3GCB9	Uncharacterized protein; Belongs to the RecA family.	Replication protein A subunit.	0.931
H3G8Y8_PHYRM	H3GED1_PHYRM	H3G8Y8	H3GED1	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.709
H3G8Y8_PHYRM	H3GRD9_PHYRM	H3G8Y8	H3GRD9	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.714
H3G8Y8_PHYRM	H3GV41_PHYRM	H3G8Y8	H3GV41	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.824
H3G8Y8_PHYRM	H3H3X3_PHYRM	H3G8Y8	H3H3X3	Uncharacterized protein; Belongs to the RecA family.	Checkpoint protein; Belongs to the HUS1 family.	0.520
H3G8Y8_PHYRM	H3H5N9_PHYRM	H3G8Y8	H3H5N9	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.624
H3G8Y8_PHYRM	H3H7K0_PHYRM	H3G8Y8	H3H7K0	Uncharacterized protein; Belongs to the RecA family.	3'-5' exonuclease domain-containing protein.	0.691
H3G8Y8_PHYRM	H3HCX3_PHYRM	H3G8Y8	H3HCX3	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.641
H3G8Y8_PHYRM	H3HDP1_PHYRM	H3G8Y8	H3HDP1	Uncharacterized protein; Belongs to the RecA family.	Uncharacterized protein.	0.927

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