(11 nodes) Mixed, incl. Interstrand cross-link repair, and Restriction endonuclease type II-like network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G6N5_PHYRM	Uncharacterized protein. (535 aa)
	H3GE15_PHYRM	XPA_C domain-containing protein. (204 aa)
	H3GG34_PHYRM	Uncharacterized protein. (1570 aa)
	H3GGX7_PHYRM	NTF2 domain-containing protein. (120 aa)
	H3GGX8_PHYRM	Uncharacterized protein. (158 aa)
	H3GLL2_PHYRM	Uncharacterized protein. (1070 aa)
	H3GTC9_PHYRM	Uncharacterized protein. (507 aa)
	H3GW51_PHYRM	Uncharacterized protein. (191 aa)
	H3GXE1_PHYRM	Uncharacterized protein. (400 aa)
	H3GZE2_PHYRM	ERCC4 domain-containing protein. (567 aa)
	H3HCJ8_PHYRM	Uncharacterized protein. (128 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G6N5_PHYRM	H3GE15_PHYRM	H3G6N5	H3GE15	Uncharacterized protein.	XPA_C domain-containing protein.	0.981
H3G6N5_PHYRM	H3GG34_PHYRM	H3G6N5	H3GG34	Uncharacterized protein.	Uncharacterized protein.	0.828
H3G6N5_PHYRM	H3GGX7_PHYRM	H3G6N5	H3GGX7	Uncharacterized protein.	NTF2 domain-containing protein.	0.999
H3G6N5_PHYRM	H3GGX8_PHYRM	H3G6N5	H3GGX8	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G6N5_PHYRM	H3GLL2_PHYRM	H3G6N5	H3GLL2	Uncharacterized protein.	Uncharacterized protein.	0.896
H3G6N5_PHYRM	H3GTC9_PHYRM	H3G6N5	H3GTC9	Uncharacterized protein.	Uncharacterized protein.	0.997
H3G6N5_PHYRM	H3GW51_PHYRM	H3G6N5	H3GW51	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G6N5_PHYRM	H3GXE1_PHYRM	H3G6N5	H3GXE1	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G6N5_PHYRM	H3GZE2_PHYRM	H3G6N5	H3GZE2	Uncharacterized protein.	ERCC4 domain-containing protein.	0.999
H3G6N5_PHYRM	H3HCJ8_PHYRM	H3G6N5	H3HCJ8	Uncharacterized protein.	Uncharacterized protein.	0.997
H3GE15_PHYRM	H3G6N5_PHYRM	H3GE15	H3G6N5	XPA_C domain-containing protein.	Uncharacterized protein.	0.981
H3GE15_PHYRM	H3GG34_PHYRM	H3GE15	H3GG34	XPA_C domain-containing protein.	Uncharacterized protein.	0.979
H3GE15_PHYRM	H3GLL2_PHYRM	H3GE15	H3GLL2	XPA_C domain-containing protein.	Uncharacterized protein.	0.871
H3GE15_PHYRM	H3GW51_PHYRM	H3GE15	H3GW51	XPA_C domain-containing protein.	Uncharacterized protein.	0.989
H3GE15_PHYRM	H3GZE2_PHYRM	H3GE15	H3GZE2	XPA_C domain-containing protein.	ERCC4 domain-containing protein.	0.924
H3GG34_PHYRM	H3G6N5_PHYRM	H3GG34	H3G6N5	Uncharacterized protein.	Uncharacterized protein.	0.828
H3GG34_PHYRM	H3GE15_PHYRM	H3GG34	H3GE15	Uncharacterized protein.	XPA_C domain-containing protein.	0.979
H3GG34_PHYRM	H3GGX7_PHYRM	H3GG34	H3GGX7	Uncharacterized protein.	NTF2 domain-containing protein.	0.833
H3GG34_PHYRM	H3GGX8_PHYRM	H3GG34	H3GGX8	Uncharacterized protein.	Uncharacterized protein.	0.833
H3GG34_PHYRM	H3GLL2_PHYRM	H3GG34	H3GLL2	Uncharacterized protein.	Uncharacterized protein.	0.857

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