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H3G7C4_PHYRM H3G7C4_PHYRM H3G9U4_PHYRM H3G9U4_PHYRM H3GAM4_PHYRM H3GAM4_PHYRM FEN1 FEN1 H3GCG0_PHYRM H3GCG0_PHYRM H3GEL6_PHYRM H3GEL6_PHYRM H3GET8_PHYRM H3GET8_PHYRM H3GL42_PHYRM H3GL42_PHYRM H3GLH5_PHYRM H3GLH5_PHYRM H3GV69_PHYRM H3GV69_PHYRM H3GZH2_PHYRM H3GZH2_PHYRM H3H6J9_PHYRM H3H6J9_PHYRM
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H3G7C4_PHYRMDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2185 aa)
H3G9U4_PHYRMProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
H3GAM4_PHYRMDNA polymerase. (1157 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (392 aa)
H3GCG0_PHYRMDNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (575 aa)
H3GEL6_PHYRMDNA polymerase. (1582 aa)
H3GET8_PHYRMDNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (469 aa)
H3GL42_PHYRMUncharacterized protein. (146 aa)
H3GLH5_PHYRMDNA primase; Belongs to the eukaryotic-type primase small subunit family. (428 aa)
H3GV69_PHYRMUncharacterized protein. (439 aa)
H3GZH2_PHYRMDNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (533 aa)
H3H6J9_PHYRMDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (689 aa)
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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