(8 nodes) Serine family amino acid catabolic process, and Bifunctional purine biosynthesis protein PurH-like network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G862_PHYRM	Uncharacterized protein. (638 aa)
	H3G863_PHYRM	MGS domain-containing protein. (616 aa)
	H3G8G6_PHYRM	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (977 aa)
	H3G967_PHYRM	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (472 aa)
	H3G9E0_PHYRM	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family. (390 aa)
	H3GN18_PHYRM	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (464 aa)
	H3GZT3_PHYRM	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (157 aa)
	H3HC90_PHYRM	FSH1 domain-containing protein. (220 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G862_PHYRM	H3G863_PHYRM	H3G862	H3G863	Uncharacterized protein.	MGS domain-containing protein.	0.986
H3G862_PHYRM	H3G8G6_PHYRM	H3G862	H3G8G6	Uncharacterized protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.861
H3G862_PHYRM	H3G967_PHYRM	H3G862	H3G967	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.970
H3G862_PHYRM	H3G9E0_PHYRM	H3G862	H3G9E0	Uncharacterized protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.947
H3G862_PHYRM	H3GN18_PHYRM	H3G862	H3GN18	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.970
H3G862_PHYRM	H3GZT3_PHYRM	H3G862	H3GZT3	Uncharacterized protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.548
H3G862_PHYRM	H3HC90_PHYRM	H3G862	H3HC90	Uncharacterized protein.	FSH1 domain-containing protein.	0.902
H3G863_PHYRM	H3G862_PHYRM	H3G863	H3G862	MGS domain-containing protein.	Uncharacterized protein.	0.986
H3G863_PHYRM	H3G8G6_PHYRM	H3G863	H3G8G6	MGS domain-containing protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.672
H3G863_PHYRM	H3G967_PHYRM	H3G863	H3G967	MGS domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.984
H3G863_PHYRM	H3G9E0_PHYRM	H3G863	H3G9E0	MGS domain-containing protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.940
H3G863_PHYRM	H3GN18_PHYRM	H3G863	H3GN18	MGS domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.984
H3G863_PHYRM	H3GZT3_PHYRM	H3G863	H3GZT3	MGS domain-containing protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.527
H3G863_PHYRM	H3HC90_PHYRM	H3G863	H3HC90	MGS domain-containing protein.	FSH1 domain-containing protein.	0.884
H3G8G6_PHYRM	H3G862_PHYRM	H3G8G6	H3G862	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Uncharacterized protein.	0.861
H3G8G6_PHYRM	H3G863_PHYRM	H3G8G6	H3G863	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	MGS domain-containing protein.	0.672
H3G8G6_PHYRM	H3G967_PHYRM	H3G8G6	H3G967	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.985
H3G8G6_PHYRM	H3G9E0_PHYRM	H3G8G6	H3G9E0	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.998
H3G8G6_PHYRM	H3GN18_PHYRM	H3G8G6	H3GN18	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.985
H3G8G6_PHYRM	H3GZT3_PHYRM	H3G8G6	H3GZT3	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.998

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About