(33 nodes) Mixed, incl. Protein retention in Golgi apparatus, and Putative collagen-binding domain network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G6V8_PHYRM	Uncharacterized protein. (365 aa)
	H3GE98_PHYRM	VPS13_C domain-containing protein. (525 aa)
	H3GE99_PHYRM	PDZ domain-containing protein. (806 aa)
	H3GFI7_PHYRM	Uncharacterized protein. (529 aa)
	H3GI81_PHYRM	Uncharacterized protein. (150 aa)
	H3GJU1_PHYRM	LsmAD domain-containing protein. (784 aa)
	H3GKM3_PHYRM	Uncharacterized protein. (590 aa)
	H3GL46_PHYRM	Chorein_N domain-containing protein. (314 aa)
	H3GLU7_PHYRM	USP domain-containing protein; Belongs to the peptidase C19 family. (610 aa)
	H3GMU1_PHYRM	Uncharacterized protein. (581 aa)
	H3GP14_PHYRM	HTH La-type RNA-binding domain-containing protein. (226 aa)
	H3GR18_PHYRM	WD_REPEATS_REGION domain-containing protein. (1920 aa)
	H3GWU1_PHYRM	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria; Belongs to the CLU family. (1296 aa)
	H3H0L2_PHYRM	Uncharacterized protein. (2873 aa)
	H3H1A7_PHYRM	Chorein_N domain-containing protein. (308 aa)
	H3H1A8_PHYRM	VWFA domain-containing protein. (2802 aa)
	H3H1P0_PHYRM	Uncharacterized protein. (531 aa)
	H3H1P1_PHYRM	Uncharacterized protein. (529 aa)
	H3H3B6_PHYRM	AD domain-containing protein. (187 aa)
	H3H4W4_PHYRM	Uncharacterized protein. (534 aa)
	H3H4W5_PHYRM	Uncharacterized protein. (532 aa)
	H3H4W6_PHYRM	Uncharacterized protein. (534 aa)
	H3H4W7_PHYRM	Uncharacterized protein. (853 aa)
	H3H5N3_PHYRM	Uncharacterized protein. (216 aa)
	H3H8W3_PHYRM	Collagen_bind_2 domain-containing protein. (168 aa)
	H3H9Z0_PHYRM	DUF4038 domain-containing protein. (219 aa)
	H3HB05_PHYRM	Uncharacterized protein. (735 aa)
	H3HB06_PHYRM	PX domain-containing protein. (1389 aa)
	H3HCA4_PHYRM	Uncharacterized protein. (503 aa)
	H3HCM9_PHYRM	Uncharacterized protein. (655 aa)
	H3HD42_PHYRM	Uncharacterized protein. (561 aa)
	H3HDP7_PHYRM	PDZ domain-containing protein. (2596 aa)
	H3HE29_PHYRM	Uncharacterized protein. (254 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G6V8_PHYRM	H3GFI7_PHYRM	H3G6V8	H3GFI7	Uncharacterized protein.	Uncharacterized protein.	0.531
H3GE98_PHYRM	H3GE99_PHYRM	H3GE98	H3GE99	VPS13_C domain-containing protein.	PDZ domain-containing protein.	0.835
H3GE99_PHYRM	H3GE98_PHYRM	H3GE99	H3GE98	PDZ domain-containing protein.	VPS13_C domain-containing protein.	0.835
H3GFI7_PHYRM	H3G6V8_PHYRM	H3GFI7	H3G6V8	Uncharacterized protein.	Uncharacterized protein.	0.531
H3GFI7_PHYRM	H3GJU1_PHYRM	H3GFI7	H3GJU1	Uncharacterized protein.	LsmAD domain-containing protein.	0.709
H3GFI7_PHYRM	H3GKM3_PHYRM	H3GFI7	H3GKM3	Uncharacterized protein.	Uncharacterized protein.	0.448
H3GFI7_PHYRM	H3GLU7_PHYRM	H3GFI7	H3GLU7	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.987
H3GFI7_PHYRM	H3GP14_PHYRM	H3GFI7	H3GP14	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.431
H3GFI7_PHYRM	H3GWU1_PHYRM	H3GFI7	H3GWU1	Uncharacterized protein.	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria; Belongs to the CLU family.	0.448
H3GJU1_PHYRM	H3GFI7_PHYRM	H3GJU1	H3GFI7	LsmAD domain-containing protein.	Uncharacterized protein.	0.709
H3GJU1_PHYRM	H3H3B6_PHYRM	H3GJU1	H3H3B6	LsmAD domain-containing protein.	AD domain-containing protein.	0.994
H3GKM3_PHYRM	H3GFI7_PHYRM	H3GKM3	H3GFI7	Uncharacterized protein.	Uncharacterized protein.	0.448
H3GLU7_PHYRM	H3GFI7_PHYRM	H3GLU7	H3GFI7	USP domain-containing protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.987
H3GLU7_PHYRM	H3GP14_PHYRM	H3GLU7	H3GP14	USP domain-containing protein; Belongs to the peptidase C19 family.	HTH La-type RNA-binding domain-containing protein.	0.461
H3GP14_PHYRM	H3GFI7_PHYRM	H3GP14	H3GFI7	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.431
H3GP14_PHYRM	H3GLU7_PHYRM	H3GP14	H3GLU7	HTH La-type RNA-binding domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.461
H3GWU1_PHYRM	H3GFI7_PHYRM	H3GWU1	H3GFI7	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria; Belongs to the CLU family.	Uncharacterized protein.	0.448
H3H3B6_PHYRM	H3GJU1_PHYRM	H3H3B6	H3GJU1	AD domain-containing protein.	LsmAD domain-containing protein.	0.994
H3HB05_PHYRM	H3HB06_PHYRM	H3HB05	H3HB06	Uncharacterized protein.	PX domain-containing protein.	0.899
H3HB06_PHYRM	H3HB05_PHYRM	H3HB06	H3HB05	PX domain-containing protein.	Uncharacterized protein.	0.899

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