(20 nodes) Mixed, incl. SPRY domain, and Yip1 domain network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G6F0_PHYRM	Protein YIPF. (137 aa)
	H3GJ69_PHYRM	PRA1 family protein. (198 aa)
	H3GJ70_PHYRM	Uncharacterized protein. (576 aa)
	H3GJN6_PHYRM	PRA1 family protein. (212 aa)
	H3GNM2_PHYRM	Uncharacterized protein. (377 aa)
	H3GNV3_PHYRM	Uncharacterized protein. (806 aa)
	H3GNV4_PHYRM	B30.2/SPRY domain-containing protein. (436 aa)
	H3GQF7_PHYRM	CTLH domain-containing protein. (331 aa)
	H3GQY0_PHYRM	B30.2/SPRY domain-containing protein. (407 aa)
	H3GS83_PHYRM	Uncharacterized protein. (241 aa)
	H3GVJ5_PHYRM	Protein YIPF. (266 aa)
	H3GVM7_PHYRM	Uncharacterized protein. (1202 aa)
	H3GYG2_PHYRM	Uncharacterized protein. (239 aa)
	H3GZV7_PHYRM	Uncharacterized protein. (472 aa)
	H3H1A4_PHYRM	B30.2/SPRY domain-containing protein. (420 aa)
	H3H1I1_PHYRM	LisH domain-containing protein. (783 aa)
	H3H1Y3_PHYRM	Uncharacterized protein. (415 aa)
	H3H419_PHYRM	Yippee domain-containing protein. (193 aa)
	H3HCK3_PHYRM	CTLH domain-containing protein. (420 aa)
	H3HD68_PHYRM	Uncharacterized protein. (243 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G6F0_PHYRM	H3GNM2_PHYRM	H3G6F0	H3GNM2	Protein YIPF.	Uncharacterized protein.	0.406
H3G6F0_PHYRM	H3GVJ5_PHYRM	H3G6F0	H3GVJ5	Protein YIPF.	Protein YIPF.	0.949
H3G6F0_PHYRM	H3HD68_PHYRM	H3G6F0	H3HD68	Protein YIPF.	Uncharacterized protein.	0.620
H3GJ69_PHYRM	H3GJ70_PHYRM	H3GJ69	H3GJ70	PRA1 family protein.	Uncharacterized protein.	0.434
H3GJ69_PHYRM	H3GNM2_PHYRM	H3GJ69	H3GNM2	PRA1 family protein.	Uncharacterized protein.	0.716
H3GJ69_PHYRM	H3GQF7_PHYRM	H3GJ69	H3GQF7	PRA1 family protein.	CTLH domain-containing protein.	0.492
H3GJ69_PHYRM	H3GS83_PHYRM	H3GJ69	H3GS83	PRA1 family protein.	Uncharacterized protein.	0.471
H3GJ69_PHYRM	H3GZV7_PHYRM	H3GJ69	H3GZV7	PRA1 family protein.	Uncharacterized protein.	0.480
H3GJ69_PHYRM	H3H1Y3_PHYRM	H3GJ69	H3H1Y3	PRA1 family protein.	Uncharacterized protein.	0.471
H3GJ69_PHYRM	H3HD68_PHYRM	H3GJ69	H3HD68	PRA1 family protein.	Uncharacterized protein.	0.592
H3GJ70_PHYRM	H3GJ69_PHYRM	H3GJ70	H3GJ69	Uncharacterized protein.	PRA1 family protein.	0.434
H3GJN6_PHYRM	H3GNM2_PHYRM	H3GJN6	H3GNM2	PRA1 family protein.	Uncharacterized protein.	0.716
H3GJN6_PHYRM	H3GQF7_PHYRM	H3GJN6	H3GQF7	PRA1 family protein.	CTLH domain-containing protein.	0.492
H3GJN6_PHYRM	H3GS83_PHYRM	H3GJN6	H3GS83	PRA1 family protein.	Uncharacterized protein.	0.471
H3GJN6_PHYRM	H3GZV7_PHYRM	H3GJN6	H3GZV7	PRA1 family protein.	Uncharacterized protein.	0.480
H3GJN6_PHYRM	H3H1Y3_PHYRM	H3GJN6	H3H1Y3	PRA1 family protein.	Uncharacterized protein.	0.471
H3GJN6_PHYRM	H3HD68_PHYRM	H3GJN6	H3HD68	PRA1 family protein.	Uncharacterized protein.	0.592
H3GNM2_PHYRM	H3G6F0_PHYRM	H3GNM2	H3G6F0	Uncharacterized protein.	Protein YIPF.	0.406
H3GNM2_PHYRM	H3GJ69_PHYRM	H3GNM2	H3GJ69	Uncharacterized protein.	PRA1 family protein.	0.716
H3GNM2_PHYRM	H3GJN6_PHYRM	H3GNM2	H3GJN6	Uncharacterized protein.	PRA1 family protein.	0.716

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