(6 nodes) Basal cortex, and NudC family network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G6V9_PHYRM	Uncharacterized protein. (70 aa)
	H3GU83_PHYRM	Uncharacterized protein. (170 aa)
	H3GYE1_PHYRM	Uncharacterized protein. (1187 aa)
	H3HB63_PHYRM	CLASP_N domain-containing protein. (218 aa)
	H3HB64_PHYRM	Uncharacterized protein. (167 aa)
	H3HD16_PHYRM	CS domain-containing protein. (202 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G6V9_PHYRM	H3GU83_PHYRM	H3G6V9	H3GU83	Uncharacterized protein.	Uncharacterized protein.	0.544
H3G6V9_PHYRM	H3GYE1_PHYRM	H3G6V9	H3GYE1	Uncharacterized protein.	Uncharacterized protein.	0.544
H3G6V9_PHYRM	H3HB63_PHYRM	H3G6V9	H3HB63	Uncharacterized protein.	CLASP_N domain-containing protein.	0.544
H3G6V9_PHYRM	H3HB64_PHYRM	H3G6V9	H3HB64	Uncharacterized protein.	Uncharacterized protein.	0.544
H3GU83_PHYRM	H3G6V9_PHYRM	H3GU83	H3G6V9	Uncharacterized protein.	Uncharacterized protein.	0.544
H3GU83_PHYRM	H3HD16_PHYRM	H3GU83	H3HD16	Uncharacterized protein.	CS domain-containing protein.	0.544
H3GYE1_PHYRM	H3G6V9_PHYRM	H3GYE1	H3G6V9	Uncharacterized protein.	Uncharacterized protein.	0.544
H3GYE1_PHYRM	H3HD16_PHYRM	H3GYE1	H3HD16	Uncharacterized protein.	CS domain-containing protein.	0.544
H3HB63_PHYRM	H3G6V9_PHYRM	H3HB63	H3G6V9	CLASP_N domain-containing protein.	Uncharacterized protein.	0.544
H3HB63_PHYRM	H3HB64_PHYRM	H3HB63	H3HB64	CLASP_N domain-containing protein.	Uncharacterized protein.	0.618
H3HB63_PHYRM	H3HD16_PHYRM	H3HB63	H3HD16	CLASP_N domain-containing protein.	CS domain-containing protein.	0.544
H3HB64_PHYRM	H3G6V9_PHYRM	H3HB64	H3G6V9	Uncharacterized protein.	Uncharacterized protein.	0.544
H3HB64_PHYRM	H3HB63_PHYRM	H3HB64	H3HB63	Uncharacterized protein.	CLASP_N domain-containing protein.	0.618
H3HB64_PHYRM	H3HD16_PHYRM	H3HB64	H3HD16	Uncharacterized protein.	CS domain-containing protein.	0.544
H3HD16_PHYRM	H3GU83_PHYRM	H3HD16	H3GU83	CS domain-containing protein.	Uncharacterized protein.	0.544
H3HD16_PHYRM	H3GYE1_PHYRM	H3HD16	H3GYE1	CS domain-containing protein.	Uncharacterized protein.	0.544
H3HD16_PHYRM	H3HB63_PHYRM	H3HD16	H3HB63	CS domain-containing protein.	CLASP_N domain-containing protein.	0.544
H3HD16_PHYRM	H3HB64_PHYRM	H3HD16	H3HB64	CS domain-containing protein.	Uncharacterized protein.	0.544

Server load: low (14%) [HD]

Permalink

Network

Fusion

Databases

Cooccurrence

Textmining

Neighborhood

Experiments

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About