(13 nodes) SNF2, N-terminal, and DEK, C-terminal network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G7F5_PHYRM	Uncharacterized protein. (767 aa)
	H3G7S2_PHYRM	Uncharacterized protein. (75 aa)
	H3GFD5_PHYRM	Uncharacterized protein. (360 aa)
	H3GJ31_PHYRM	Uncharacterized protein. (2159 aa)
	H3GKC3_PHYRM	Uncharacterized protein. (583 aa)
	H3GRS2_PHYRM	Uncharacterized protein. (1068 aa)
	H3GSA4_PHYRM	DEK_C domain-containing protein. (375 aa)
	H3GSL8_PHYRM	Uncharacterized protein. (1128 aa)
	H3GTE0_PHYRM	Uncharacterized protein. (1896 aa)
	H3GTJ9_PHYRM	Uncharacterized protein. (1398 aa)
	H3GV03_PHYRM	B-block_TFIIIC domain-containing protein. (1395 aa)
	H3GW83_PHYRM	Uncharacterized protein. (966 aa)
	H3HCY4_PHYRM	Uncharacterized protein. (1464 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G7F5_PHYRM	H3G7S2_PHYRM	H3G7F5	H3G7S2	Uncharacterized protein.	Uncharacterized protein.	0.592
H3G7F5_PHYRM	H3GFD5_PHYRM	H3G7F5	H3GFD5	Uncharacterized protein.	Uncharacterized protein.	0.635
H3G7F5_PHYRM	H3GJ31_PHYRM	H3G7F5	H3GJ31	Uncharacterized protein.	Uncharacterized protein.	0.404
H3G7F5_PHYRM	H3GKC3_PHYRM	H3G7F5	H3GKC3	Uncharacterized protein.	Uncharacterized protein.	0.544
H3G7F5_PHYRM	H3GRS2_PHYRM	H3G7F5	H3GRS2	Uncharacterized protein.	Uncharacterized protein.	0.460
H3G7F5_PHYRM	H3GSA4_PHYRM	H3G7F5	H3GSA4	Uncharacterized protein.	DEK_C domain-containing protein.	0.544
H3G7F5_PHYRM	H3GTE0_PHYRM	H3G7F5	H3GTE0	Uncharacterized protein.	Uncharacterized protein.	0.404
H3G7F5_PHYRM	H3GV03_PHYRM	H3G7F5	H3GV03	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.847
H3G7F5_PHYRM	H3GW83_PHYRM	H3G7F5	H3GW83	Uncharacterized protein.	Uncharacterized protein.	0.420
H3G7S2_PHYRM	H3G7F5_PHYRM	H3G7S2	H3G7F5	Uncharacterized protein.	Uncharacterized protein.	0.592
H3G7S2_PHYRM	H3GFD5_PHYRM	H3G7S2	H3GFD5	Uncharacterized protein.	Uncharacterized protein.	0.635
H3G7S2_PHYRM	H3GJ31_PHYRM	H3G7S2	H3GJ31	Uncharacterized protein.	Uncharacterized protein.	0.535
H3G7S2_PHYRM	H3GKC3_PHYRM	H3G7S2	H3GKC3	Uncharacterized protein.	Uncharacterized protein.	0.461
H3G7S2_PHYRM	H3GSA4_PHYRM	H3G7S2	H3GSA4	Uncharacterized protein.	DEK_C domain-containing protein.	0.461
H3G7S2_PHYRM	H3GTE0_PHYRM	H3G7S2	H3GTE0	Uncharacterized protein.	Uncharacterized protein.	0.533
H3G7S2_PHYRM	H3GTJ9_PHYRM	H3G7S2	H3GTJ9	Uncharacterized protein.	Uncharacterized protein.	0.590
H3G7S2_PHYRM	H3GV03_PHYRM	H3G7S2	H3GV03	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.635
H3G7S2_PHYRM	H3GW83_PHYRM	H3G7S2	H3GW83	Uncharacterized protein.	Uncharacterized protein.	0.678
H3G7S2_PHYRM	H3HCY4_PHYRM	H3G7S2	H3HCY4	Uncharacterized protein.	Uncharacterized protein.	0.535
H3GFD5_PHYRM	H3G7F5_PHYRM	H3GFD5	H3G7F5	Uncharacterized protein.	Uncharacterized protein.	0.635

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