(5 nodes) Mixed, incl. GDP metabolic process, and Signaling receptor complex adaptor activity network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GMK0_PHYRM	Uncharacterized protein. (815 aa)
	H3GXH6_PHYRM	Uncharacterized protein. (341 aa)
	H3GYA8_PHYRM	Protein kinase domain-containing protein. (133 aa)
	H3H7W8_PHYRM	Uncharacterized protein. (373 aa)
	H3HDG6_PHYRM	ANK_REP_REGION domain-containing protein. (163 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3GMK0_PHYRM	H3GXH6_PHYRM	H3GMK0	H3GXH6	Uncharacterized protein.	Uncharacterized protein.	0.970
H3GMK0_PHYRM	H3GYA8_PHYRM	H3GMK0	H3GYA8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.997
H3GMK0_PHYRM	H3H7W8_PHYRM	H3GMK0	H3H7W8	Uncharacterized protein.	Uncharacterized protein.	0.897
H3GMK0_PHYRM	H3HDG6_PHYRM	H3GMK0	H3HDG6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.992
H3GXH6_PHYRM	H3GMK0_PHYRM	H3GXH6	H3GMK0	Uncharacterized protein.	Uncharacterized protein.	0.970
H3GXH6_PHYRM	H3GYA8_PHYRM	H3GXH6	H3GYA8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.999
H3GXH6_PHYRM	H3H7W8_PHYRM	H3GXH6	H3H7W8	Uncharacterized protein.	Uncharacterized protein.	0.964
H3GXH6_PHYRM	H3HDG6_PHYRM	H3GXH6	H3HDG6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.724
H3GYA8_PHYRM	H3GMK0_PHYRM	H3GYA8	H3GMK0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.997
H3GYA8_PHYRM	H3GXH6_PHYRM	H3GYA8	H3GXH6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.999
H3GYA8_PHYRM	H3H7W8_PHYRM	H3GYA8	H3H7W8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.875
H3GYA8_PHYRM	H3HDG6_PHYRM	H3GYA8	H3HDG6	Protein kinase domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.993
H3H7W8_PHYRM	H3GMK0_PHYRM	H3H7W8	H3GMK0	Uncharacterized protein.	Uncharacterized protein.	0.897
H3H7W8_PHYRM	H3GXH6_PHYRM	H3H7W8	H3GXH6	Uncharacterized protein.	Uncharacterized protein.	0.964
H3H7W8_PHYRM	H3GYA8_PHYRM	H3H7W8	H3GYA8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.875
H3H7W8_PHYRM	H3HDG6_PHYRM	H3H7W8	H3HDG6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.775
H3HDG6_PHYRM	H3GMK0_PHYRM	H3HDG6	H3GMK0	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.992
H3HDG6_PHYRM	H3GXH6_PHYRM	H3HDG6	H3GXH6	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.724
H3HDG6_PHYRM	H3GYA8_PHYRM	H3HDG6	H3GYA8	ANK_REP_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.993
H3HDG6_PHYRM	H3H7W8_PHYRM	H3HDG6	H3H7W8	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.775

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