(37 nodes) Small-subunit processome, and Regulation of transcription by RNA polymerase I network (Phytophthora ramorum)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Your Input:
	H3G5E0_PHYRM	PINc domain-containing protein. (194 aa)
	H3G5L4_PHYRM	WD_REPEATS_REGION domain-containing protein. (394 aa)
	H3G5X2_PHYRM	Nop domain-containing protein. (237 aa)
	H3G5Z0_PHYRM	Nop domain-containing protein. (462 aa)
	H3G884_PHYRM	Brix domain-containing protein. (287 aa)
	H3G8P9_PHYRM	Nop domain-containing protein. (469 aa)
	H3G947_PHYRM	Uncharacterized protein. (324 aa)
	H3G971_PHYRM	S4 RNA-binding domain-containing protein. (184 aa)
	H3G9P5_PHYRM	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (250 aa)
	H3G9W2_PHYRM	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	H3G9W7_PHYRM	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1035 aa)
	H3GA67_PHYRM	WD_REPEATS_REGION domain-containing protein. (514 aa)
	H3GAL1_PHYRM	WD_REPEATS_REGION domain-containing protein. (475 aa)
	H3GCA3_PHYRM	Uncharacterized protein. (1940 aa)
	H3GEK8_PHYRM	Uncharacterized protein. (1133 aa)
	H3GFU4_PHYRM	WD_REPEATS_REGION domain-containing protein. (330 aa)
	H3GGQ6_PHYRM	WD_REPEATS_REGION domain-containing protein. (873 aa)
	H3GHE4_PHYRM	WD_REPEATS_REGION domain-containing protein. (920 aa)
	H3GHQ5_PHYRM	Uncharacterized protein. (436 aa)
	H3GL55_PHYRM	NUC153 domain-containing protein. (276 aa)
	H3GM34_PHYRM	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (597 aa)
	H3GMC4_PHYRM	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (399 aa)
	H3GN45_PHYRM	Uncharacterized protein. (885 aa)
	H3GPN6_PHYRM	Uncharacterized protein. (347 aa)
	H3GQ98_PHYRM	CBF domain-containing protein. (598 aa)
	H3GQY6_PHYRM	WD_REPEATS_REGION domain-containing protein. (555 aa)
	H3GRQ7_PHYRM	WD_REPEATS_REGION domain-containing protein. (685 aa)
	H3GSY2_PHYRM	RRP7 domain-containing protein. (256 aa)
	H3GTE2_PHYRM	Uncharacterized protein. (219 aa)
	H3GTR2_PHYRM	Bms1-type G domain-containing protein. (1195 aa)
	H3GTV1_PHYRM	DRIM domain-containing protein. (2997 aa)
	H3GU36_PHYRM	Uncharacterized protein. (1020 aa)
	H3GXX6_PHYRM	Uncharacterized protein. (946 aa)
	H3H1J9_PHYRM	BP28CT domain-containing protein. (2093 aa)
	H3H2A5_PHYRM	WD_REPEATS_REGION domain-containing protein. (1043 aa)
	H3H3X6_PHYRM	Uncharacterized protein. (672 aa)
	H3HC64_PHYRM	WD_REPEATS_REGION domain-containing protein. (462 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5E0_PHYRM	H3G5L4_PHYRM	H3G5E0	H3G5L4	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.988
H3G5E0_PHYRM	H3G5X2_PHYRM	H3G5E0	H3G5X2	PINc domain-containing protein.	Nop domain-containing protein.	0.989
H3G5E0_PHYRM	H3G5Z0_PHYRM	H3G5E0	H3G5Z0	PINc domain-containing protein.	Nop domain-containing protein.	0.989
H3G5E0_PHYRM	H3G884_PHYRM	H3G5E0	H3G884	PINc domain-containing protein.	Brix domain-containing protein.	0.992
H3G5E0_PHYRM	H3G8P9_PHYRM	H3G5E0	H3G8P9	PINc domain-containing protein.	Nop domain-containing protein.	0.989
H3G5E0_PHYRM	H3G947_PHYRM	H3G5E0	H3G947	PINc domain-containing protein.	Uncharacterized protein.	0.986
H3G5E0_PHYRM	H3G971_PHYRM	H3G5E0	H3G971	PINc domain-containing protein.	S4 RNA-binding domain-containing protein.	0.996
H3G5E0_PHYRM	H3G9P5_PHYRM	H3G5E0	H3G9P5	PINc domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
H3G5E0_PHYRM	H3G9W2_PHYRM	H3G5E0	H3G9W2	PINc domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.991
H3G5E0_PHYRM	H3G9W7_PHYRM	H3G5E0	H3G9W7	PINc domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.952
H3G5E0_PHYRM	H3GA67_PHYRM	H3G5E0	H3GA67	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.979
H3G5E0_PHYRM	H3GAL1_PHYRM	H3G5E0	H3GAL1	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
H3G5E0_PHYRM	H3GCA3_PHYRM	H3G5E0	H3GCA3	PINc domain-containing protein.	Uncharacterized protein.	0.999
H3G5E0_PHYRM	H3GEK8_PHYRM	H3G5E0	H3GEK8	PINc domain-containing protein.	Uncharacterized protein.	0.996
H3G5E0_PHYRM	H3GFU4_PHYRM	H3G5E0	H3GFU4	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.978
H3G5E0_PHYRM	H3GGQ6_PHYRM	H3G5E0	H3GGQ6	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.977
H3G5E0_PHYRM	H3GHE4_PHYRM	H3G5E0	H3GHE4	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.984
H3G5E0_PHYRM	H3GHQ5_PHYRM	H3G5E0	H3GHQ5	PINc domain-containing protein.	Uncharacterized protein.	0.990
H3G5E0_PHYRM	H3GL55_PHYRM	H3G5E0	H3GL55	PINc domain-containing protein.	NUC153 domain-containing protein.	0.967
H3G5E0_PHYRM	H3GM34_PHYRM	H3G5E0	H3GM34	PINc domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.989

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