(26 nodes) Small-subunit processome, and Regulation of transcription by RNA polymerase I network (Phytophthora ramorum)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Predicted Interactions

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Your Input:
	H3G5E0_PHYRM	PINc domain-containing protein. (194 aa)
	H3G884_PHYRM	Brix domain-containing protein. (287 aa)
	H3G971_PHYRM	S4 RNA-binding domain-containing protein. (184 aa)
	H3G9P5_PHYRM	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (250 aa)
	H3GA67_PHYRM	WD_REPEATS_REGION domain-containing protein. (514 aa)
	H3GAL1_PHYRM	WD_REPEATS_REGION domain-containing protein. (475 aa)
	H3GCA3_PHYRM	Uncharacterized protein. (1940 aa)
	H3GEK8_PHYRM	Uncharacterized protein. (1133 aa)
	H3GGQ6_PHYRM	WD_REPEATS_REGION domain-containing protein. (873 aa)
	H3GHE4_PHYRM	WD_REPEATS_REGION domain-containing protein. (920 aa)
	H3GM34_PHYRM	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (597 aa)
	H3GMC4_PHYRM	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (399 aa)
	H3GN45_PHYRM	Uncharacterized protein. (885 aa)
	H3GPN6_PHYRM	Uncharacterized protein. (347 aa)
	H3GQ98_PHYRM	CBF domain-containing protein. (598 aa)
	H3GQY6_PHYRM	WD_REPEATS_REGION domain-containing protein. (555 aa)
	H3GRQ7_PHYRM	WD_REPEATS_REGION domain-containing protein. (685 aa)
	H3GSY2_PHYRM	RRP7 domain-containing protein. (256 aa)
	H3GTE2_PHYRM	Uncharacterized protein. (219 aa)
	H3GTR2_PHYRM	Bms1-type G domain-containing protein. (1195 aa)
	H3GU36_PHYRM	Uncharacterized protein. (1020 aa)
	H3GXX6_PHYRM	Uncharacterized protein. (946 aa)
	H3H1J9_PHYRM	BP28CT domain-containing protein. (2093 aa)
	H3H2A5_PHYRM	WD_REPEATS_REGION domain-containing protein. (1043 aa)
	H3H3X6_PHYRM	Uncharacterized protein. (672 aa)
	H3HC64_PHYRM	WD_REPEATS_REGION domain-containing protein. (462 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5E0_PHYRM	H3G884_PHYRM	H3G5E0	H3G884	PINc domain-containing protein.	Brix domain-containing protein.	0.992
H3G5E0_PHYRM	H3G971_PHYRM	H3G5E0	H3G971	PINc domain-containing protein.	S4 RNA-binding domain-containing protein.	0.996
H3G5E0_PHYRM	H3G9P5_PHYRM	H3G5E0	H3G9P5	PINc domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
H3G5E0_PHYRM	H3GA67_PHYRM	H3G5E0	H3GA67	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.979
H3G5E0_PHYRM	H3GAL1_PHYRM	H3G5E0	H3GAL1	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
H3G5E0_PHYRM	H3GCA3_PHYRM	H3G5E0	H3GCA3	PINc domain-containing protein.	Uncharacterized protein.	0.999
H3G5E0_PHYRM	H3GEK8_PHYRM	H3G5E0	H3GEK8	PINc domain-containing protein.	Uncharacterized protein.	0.996
H3G5E0_PHYRM	H3GGQ6_PHYRM	H3G5E0	H3GGQ6	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.977
H3G5E0_PHYRM	H3GHE4_PHYRM	H3G5E0	H3GHE4	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.984
H3G5E0_PHYRM	H3GM34_PHYRM	H3G5E0	H3GM34	PINc domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.989
H3G5E0_PHYRM	H3GMC4_PHYRM	H3G5E0	H3GMC4	PINc domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
H3G5E0_PHYRM	H3GN45_PHYRM	H3G5E0	H3GN45	PINc domain-containing protein.	Uncharacterized protein.	0.999
H3G5E0_PHYRM	H3GPN6_PHYRM	H3G5E0	H3GPN6	PINc domain-containing protein.	Uncharacterized protein.	0.994
H3G5E0_PHYRM	H3GQ98_PHYRM	H3G5E0	H3GQ98	PINc domain-containing protein.	CBF domain-containing protein.	0.999
H3G5E0_PHYRM	H3GQY6_PHYRM	H3G5E0	H3GQY6	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
H3G5E0_PHYRM	H3GRQ7_PHYRM	H3G5E0	H3GRQ7	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.992
H3G5E0_PHYRM	H3GSY2_PHYRM	H3G5E0	H3GSY2	PINc domain-containing protein.	RRP7 domain-containing protein.	0.986
H3G5E0_PHYRM	H3GTE2_PHYRM	H3G5E0	H3GTE2	PINc domain-containing protein.	Uncharacterized protein.	0.999
H3G5E0_PHYRM	H3GTR2_PHYRM	H3G5E0	H3GTR2	PINc domain-containing protein.	Bms1-type G domain-containing protein.	0.993
H3G5E0_PHYRM	H3GU36_PHYRM	H3G5E0	H3GU36	PINc domain-containing protein.	Uncharacterized protein.	0.988

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