(49 nodes) Mixed, incl. Pseudouridine synthase activity, and Endoplasmic reticulum vesicle transporter network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G508_PHYRM	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis. (480 aa)
	H3G5M6_PHYRM	OBG-type G domain-containing protein. (290 aa)
	H3G702_PHYRM	Uncharacterized protein. (364 aa)
	H3G7S7_PHYRM	TrmE_N domain-containing protein. (142 aa)
	H3G805_PHYRM	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (461 aa)
	H3GAI9_PHYRM	GIDA_assoc domain-containing protein. (662 aa)
	H3GHX8_PHYRM	tRNA pseudouridine synthase. (294 aa)
	H3GI95_PHYRM	Uncharacterized protein. (311 aa)
	H3GII5_PHYRM	Uncharacterized protein. (215 aa)
	H3GII7_PHYRM	PseudoU_synth_2 domain-containing protein. (242 aa)
	H3GIJ2_PHYRM	PseudoU_synth_2 domain-containing protein. (321 aa)
	H3GK55_PHYRM	PseudoU_synth_2 domain-containing protein. (482 aa)
	H3GKQ5_PHYRM	Uncharacterized protein. (278 aa)
	H3GLC0_PHYRM	Uncharacterized protein. (1198 aa)
	H3GMT6_PHYRM	Uncharacterized protein. (153 aa)
	H3GN62_PHYRM	Uncharacterized protein. (408 aa)
	H3GN66_PHYRM	Uncharacterized protein. (392 aa)
	H3GNS3_PHYRM	tRNA pseudouridine synthase. (343 aa)
	H3GRV2_PHYRM	PseudoU_synth_2 domain-containing protein. (373 aa)
	H3GSW8_PHYRM	SpoU_sub_bind domain-containing protein. (344 aa)
	H3GXW5_PHYRM	TRUD domain-containing protein. (697 aa)
	H3GXX2_PHYRM	TRUD domain-containing protein. (810 aa)
	H3GYB6_PHYRM	Thioredoxin domain-containing protein. (469 aa)
	H3GZ35_PHYRM	PseudoU_synth_2 domain-containing protein. (609 aa)
	H3GZ36_PHYRM	Uncharacterized protein. (393 aa)
	H3GZN5_PHYRM	Uncharacterized protein. (411 aa)
	H3GZN7_PHYRM	Uncharacterized protein. (256 aa)
	H3GZN8_PHYRM	Uncharacterized protein. (365 aa)
	H3GZP3_PHYRM	Uncharacterized protein. (197 aa)
	H3GZQ8_PHYRM	Uncharacterized protein. (398 aa)
	H3H2Q1_PHYRM	FtsJ domain-containing protein. (202 aa)
	H3H327_PHYRM	Uncharacterized protein. (435 aa)
	H3H3D3_PHYRM	PlsC domain-containing protein. (1300 aa)
	H3H595_PHYRM	Uncharacterized protein. (200 aa)
	H3H6P0_PHYRM	Thioredoxin domain-containing protein. (313 aa)
	H3H7L4_PHYRM	Uncharacterized protein. (225 aa)
	H3H7X0_PHYRM	PseudoU_synth_2 domain-containing protein. (243 aa)
	H3H8S5_PHYRM	Uncharacterized protein. (630 aa)
	H3H8V6_PHYRM	COPIIcoated_ERV domain-containing protein. (100 aa)
	H3H9T5_PHYRM	COPIIcoated_ERV domain-containing protein. (200 aa)
	H3HAG5_PHYRM	Uncharacterized protein. (669 aa)
	H3HAX9_PHYRM	S4 RNA-binding domain-containing protein. (394 aa)
	H3HBH6_PHYRM	Uncharacterized protein. (442 aa)
	H3HCE6_PHYRM	EngB-type G domain-containing protein. (290 aa)
	H3HCL1_PHYRM	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1333 aa)
	H3HDE5_PHYRM	Uncharacterized protein. (240 aa)
	H3HDY8_PHYRM	Uncharacterized protein. (374 aa)
	H3HE96_PHYRM	Uncharacterized protein. (1282 aa)
	H3HEH4_PHYRM	Uncharacterized protein. (623 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G508_PHYRM	H3G702_PHYRM	H3G508	H3G702	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.714
H3G508_PHYRM	H3GAI9_PHYRM	H3G508	H3GAI9	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	GIDA_assoc domain-containing protein.	0.883
H3G508_PHYRM	H3GI95_PHYRM	H3G508	H3GI95	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.692
H3G508_PHYRM	H3GII5_PHYRM	H3G508	H3GII5	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.472
H3G508_PHYRM	H3GII7_PHYRM	H3G508	H3GII7	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	PseudoU_synth_2 domain-containing protein.	0.472
H3G508_PHYRM	H3GIJ2_PHYRM	H3G508	H3GIJ2	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	PseudoU_synth_2 domain-containing protein.	0.472
H3G508_PHYRM	H3GK55_PHYRM	H3G508	H3GK55	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	PseudoU_synth_2 domain-containing protein.	0.472
H3G508_PHYRM	H3GKQ5_PHYRM	H3G508	H3GKQ5	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.856
H3G508_PHYRM	H3GLC0_PHYRM	H3G508	H3GLC0	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.791
H3G508_PHYRM	H3GMT6_PHYRM	H3G508	H3GMT6	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.692
H3G508_PHYRM	H3GN62_PHYRM	H3G508	H3GN62	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.472
H3G508_PHYRM	H3GN66_PHYRM	H3G508	H3GN66	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.472
H3G508_PHYRM	H3GRV2_PHYRM	H3G508	H3GRV2	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	PseudoU_synth_2 domain-containing protein.	0.472
H3G508_PHYRM	H3GSW8_PHYRM	H3G508	H3GSW8	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	SpoU_sub_bind domain-containing protein.	0.711
H3G508_PHYRM	H3GXW5_PHYRM	H3G508	H3GXW5	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	TRUD domain-containing protein.	0.692
H3G508_PHYRM	H3GXX2_PHYRM	H3G508	H3GXX2	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	TRUD domain-containing protein.	0.692
H3G508_PHYRM	H3GYB6_PHYRM	H3G508	H3GYB6	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Thioredoxin domain-containing protein.	0.856
H3G508_PHYRM	H3GZ35_PHYRM	H3G508	H3GZ35	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	PseudoU_synth_2 domain-containing protein.	0.472
H3G508_PHYRM	H3GZ36_PHYRM	H3G508	H3GZ36	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.472
H3G508_PHYRM	H3GZN5_PHYRM	H3G508	H3GZN5	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.	Uncharacterized protein.	0.472

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