(10 nodes) Mixed, incl. Pseudouridine synthase, TruD, and Regulation of ribosome biogenesis network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G5M6_PHYRM	OBG-type G domain-containing protein. (290 aa)
	H3GI95_PHYRM	Uncharacterized protein. (311 aa)
	H3GLC0_PHYRM	Uncharacterized protein. (1198 aa)
	H3GMT6_PHYRM	Uncharacterized protein. (153 aa)
	H3GSW8_PHYRM	SpoU_sub_bind domain-containing protein. (344 aa)
	H3GXW5_PHYRM	TRUD domain-containing protein. (697 aa)
	H3GXX2_PHYRM	TRUD domain-containing protein. (810 aa)
	H3H2Q1_PHYRM	FtsJ domain-containing protein. (202 aa)
	H3HCE6_PHYRM	EngB-type G domain-containing protein. (290 aa)
	H3HCL1_PHYRM	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1333 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5M6_PHYRM	H3GI95_PHYRM	H3G5M6	H3GI95	OBG-type G domain-containing protein.	Uncharacterized protein.	0.933
H3G5M6_PHYRM	H3GLC0_PHYRM	H3G5M6	H3GLC0	OBG-type G domain-containing protein.	Uncharacterized protein.	0.717
H3G5M6_PHYRM	H3GMT6_PHYRM	H3G5M6	H3GMT6	OBG-type G domain-containing protein.	Uncharacterized protein.	0.933
H3G5M6_PHYRM	H3GSW8_PHYRM	H3G5M6	H3GSW8	OBG-type G domain-containing protein.	SpoU_sub_bind domain-containing protein.	0.562
H3G5M6_PHYRM	H3H2Q1_PHYRM	H3G5M6	H3H2Q1	OBG-type G domain-containing protein.	FtsJ domain-containing protein.	0.786
H3G5M6_PHYRM	H3HCE6_PHYRM	H3G5M6	H3HCE6	OBG-type G domain-containing protein.	EngB-type G domain-containing protein.	0.442
H3G5M6_PHYRM	H3HCL1_PHYRM	H3G5M6	H3HCL1	OBG-type G domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.536
H3GI95_PHYRM	H3G5M6_PHYRM	H3GI95	H3G5M6	Uncharacterized protein.	OBG-type G domain-containing protein.	0.933
H3GI95_PHYRM	H3GLC0_PHYRM	H3GI95	H3GLC0	Uncharacterized protein.	Uncharacterized protein.	0.947
H3GI95_PHYRM	H3GSW8_PHYRM	H3GI95	H3GSW8	Uncharacterized protein.	SpoU_sub_bind domain-containing protein.	0.780
H3GI95_PHYRM	H3GXW5_PHYRM	H3GI95	H3GXW5	Uncharacterized protein.	TRUD domain-containing protein.	0.739
H3GI95_PHYRM	H3GXX2_PHYRM	H3GI95	H3GXX2	Uncharacterized protein.	TRUD domain-containing protein.	0.739
H3GI95_PHYRM	H3H2Q1_PHYRM	H3GI95	H3H2Q1	Uncharacterized protein.	FtsJ domain-containing protein.	0.741
H3GI95_PHYRM	H3HCE6_PHYRM	H3GI95	H3HCE6	Uncharacterized protein.	EngB-type G domain-containing protein.	0.899
H3GI95_PHYRM	H3HCL1_PHYRM	H3GI95	H3HCL1	Uncharacterized protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.774
H3GLC0_PHYRM	H3G5M6_PHYRM	H3GLC0	H3G5M6	Uncharacterized protein.	OBG-type G domain-containing protein.	0.717
H3GLC0_PHYRM	H3GI95_PHYRM	H3GLC0	H3GI95	Uncharacterized protein.	Uncharacterized protein.	0.947
H3GLC0_PHYRM	H3GMT6_PHYRM	H3GLC0	H3GMT6	Uncharacterized protein.	Uncharacterized protein.	0.947
H3GLC0_PHYRM	H3GSW8_PHYRM	H3GLC0	H3GSW8	Uncharacterized protein.	SpoU_sub_bind domain-containing protein.	0.704
H3GLC0_PHYRM	H3GXW5_PHYRM	H3GLC0	H3GXW5	Uncharacterized protein.	TRUD domain-containing protein.	0.882

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