STRINGSTRING
H3GHX8_PHYRM H3GHX8_PHYRM H3GNS3_PHYRM H3GNS3_PHYRM H3H327_PHYRM H3H327_PHYRM H3H3D3_PHYRM H3H3D3_PHYRM H3HAG5_PHYRM H3HAG5_PHYRM H3HBH6_PHYRM H3HBH6_PHYRM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H3GHX8_PHYRMtRNA pseudouridine synthase. (294 aa)
H3GNS3_PHYRMtRNA pseudouridine synthase. (343 aa)
H3H327_PHYRMUncharacterized protein. (435 aa)
H3H3D3_PHYRMPlsC domain-containing protein. (1300 aa)
H3HAG5_PHYRMUncharacterized protein. (669 aa)
H3HBH6_PHYRMUncharacterized protein. (442 aa)
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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