STRINGSTRING
H3G510_PHYRM H3G510_PHYRM H3G531_PHYRM H3G531_PHYRM H3G535_PHYRM H3G535_PHYRM H3G542_PHYRM H3G542_PHYRM H3G549_PHYRM H3G549_PHYRM H3G5B7_PHYRM H3G5B7_PHYRM LSM4 LSM4 H3G5H2_PHYRM H3G5H2_PHYRM H3G5N3_PHYRM H3G5N3_PHYRM H3G608_PHYRM H3G608_PHYRM H3G668_PHYRM H3G668_PHYRM H3G6L1_PHYRM H3G6L1_PHYRM H3G6V1_PHYRM H3G6V1_PHYRM LSM5 LSM5 H3G7N9_PHYRM H3G7N9_PHYRM H3G7Q5_PHYRM H3G7Q5_PHYRM H3G7S5_PHYRM H3G7S5_PHYRM LSM8 LSM8 H3G878_PHYRM H3G878_PHYRM H3G881_PHYRM H3G881_PHYRM H3G8I9_PHYRM H3G8I9_PHYRM H3G8K4_PHYRM H3G8K4_PHYRM H3G8P4_PHYRM H3G8P4_PHYRM H3G8Y1_PHYRM H3G8Y1_PHYRM H3G917_PHYRM H3G917_PHYRM H3G919_PHYRM H3G919_PHYRM H3G933_PHYRM H3G933_PHYRM LSM3 LSM3 H3G945_PHYRM H3G945_PHYRM H3G976_PHYRM H3G976_PHYRM H3G9C0_PHYRM H3G9C0_PHYRM H3G9C3_PHYRM H3G9C3_PHYRM H3G9Y5_PHYRM H3G9Y5_PHYRM H3GA86_PHYRM H3GA86_PHYRM H3GAL5_PHYRM H3GAL5_PHYRM H3GAQ7_PHYRM H3GAQ7_PHYRM H3GBE3_PHYRM H3GBE3_PHYRM H3GC56_PHYRM H3GC56_PHYRM H3GEY7_PHYRM H3GEY7_PHYRM H3GGH2_PHYRM H3GGH2_PHYRM LSM1 LSM1 H3GIC6_PHYRM H3GIC6_PHYRM H3GIE9_PHYRM H3GIE9_PHYRM H3GIM4_PHYRM H3GIM4_PHYRM H3GKT1_PHYRM H3GKT1_PHYRM H3GLN4_PHYRM H3GLN4_PHYRM H3GMH5_PHYRM H3GMH5_PHYRM H3GNM0_PHYRM H3GNM0_PHYRM H3GPP2_PHYRM H3GPP2_PHYRM H3GPP7_PHYRM H3GPP7_PHYRM H3GQR2_PHYRM H3GQR2_PHYRM H3GQZ6_PHYRM H3GQZ6_PHYRM H3GRV9_PHYRM H3GRV9_PHYRM H3GS79_PHYRM H3GS79_PHYRM H3GTC8_PHYRM H3GTC8_PHYRM H3GVK2_PHYRM H3GVK2_PHYRM H3GWG5_PHYRM H3GWG5_PHYRM H3GWN9_PHYRM H3GWN9_PHYRM H3GWR6_PHYRM H3GWR6_PHYRM H3GYF6_PHYRM H3GYF6_PHYRM H3GZH0_PHYRM H3GZH0_PHYRM H3GZT7_PHYRM H3GZT7_PHYRM H3H6B8_PHYRM H3H6B8_PHYRM H3HAV5_PHYRM H3HAV5_PHYRM H3HB24_PHYRM H3HB24_PHYRM H3HB78_PHYRM H3HB78_PHYRM H3HBE3_PHYRM H3HBE3_PHYRM H3HCQ4_PHYRM H3HCQ4_PHYRM H3HCZ6_PHYRM H3HCZ6_PHYRM H3HEF3_PHYRM H3HEF3_PHYRM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H3G510_PHYRMUncharacterized protein. (72 aa)
H3G531_PHYRMSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
H3G535_PHYRMSm domain-containing protein. (78 aa)
H3G542_PHYRMSmall nuclear ribonucleoprotein Sm D3. (85 aa)
H3G549_PHYRMSmall nuclear ribonucleoprotein G. (76 aa)
H3G5B7_PHYRMU6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (118 aa)
H3G5H2_PHYRMSmall nuclear ribonucleoprotein Sm D3. (73 aa)
H3G5N3_PHYRMSm domain-containing protein. (88 aa)
H3G608_PHYRMUncharacterized protein; Belongs to the DEAD box helicase family. (561 aa)
H3G668_PHYRMRRM domain-containing protein. (161 aa)
H3G6L1_PHYRMMatrin-type domain-containing protein. (235 aa)
H3G6V1_PHYRMUncharacterized protein. (2122 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (67 aa)
H3G7N9_PHYRMUncharacterized protein; Belongs to the DEAD box helicase family. (763 aa)
H3G7Q5_PHYRMSmall nuclear ribonucleoprotein Sm D2. (96 aa)
H3G7S5_PHYRMMatrin-type domain-containing protein. (235 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (88 aa)
H3G878_PHYRMUncharacterized protein. (150 aa)
H3G881_PHYRMUbiquitin-like domain-containing protein. (73 aa)
H3G8I9_PHYRMMPN domain-containing protein. (2338 aa)
H3G8K4_PHYRMPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (191 aa)
H3G8P4_PHYRMSm domain-containing protein. (105 aa)
H3G8Y1_PHYRMNop domain-containing protein. (522 aa)
H3G917_PHYRMTr-type G domain-containing protein. (983 aa)
H3G919_PHYRMSm domain-containing protein. (84 aa)
H3G933_PHYRMUncharacterized protein. (698 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
H3G945_PHYRMWD_REPEATS_REGION domain-containing protein. (300 aa)
H3G976_PHYRMSF3b1 domain-containing protein. (1229 aa)
H3G9C0_PHYRMUncharacterized protein. (142 aa)
H3G9C3_PHYRMUncharacterized protein. (201 aa)
H3G9Y5_PHYRMCPSF_A domain-containing protein. (1197 aa)
H3GA86_PHYRMWD_REPEATS_REGION domain-containing protein. (417 aa)
H3GAL5_PHYRMRRM domain-containing protein. (122 aa)
H3GAQ7_PHYRMUncharacterized protein. (110 aa)
H3GBE3_PHYRMUncharacterized protein. (407 aa)
H3GC56_PHYRMSURP motif domain-containing protein. (244 aa)
H3GEY7_PHYRMUncharacterized protein. (1016 aa)
H3GGH2_PHYRMUncharacterized protein. (697 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (122 aa)
H3GIC6_PHYRMUncharacterized protein. (1600 aa)
H3GIE9_PHYRMRED_N domain-containing protein. (646 aa)
H3GIM4_PHYRMTudor domain-containing protein. (352 aa)
H3GKT1_PHYRMUncharacterized protein. (962 aa)
H3GLN4_PHYRMMatrin-type domain-containing protein. (415 aa)
H3GMH5_PHYRMU1-type domain-containing protein. (220 aa)
H3GNM0_PHYRMUncharacterized protein. (613 aa)
H3GPP2_PHYRMUncharacterized protein. (785 aa)
H3GPP7_PHYRMWD_REPEATS_REGION domain-containing protein. (363 aa)
H3GQR2_PHYRMPSP domain-containing protein. (537 aa)
H3GQZ6_PHYRMSAP domain-containing protein. (305 aa)
H3GRV9_PHYRMUncharacterized protein. (224 aa)
H3GS79_PHYRMWD_REPEATS_REGION domain-containing protein. (543 aa)
H3GTC8_PHYRMC2H2-type domain-containing protein. (520 aa)
H3GVK2_PHYRMMFAP1 domain-containing protein. (481 aa)
H3GWG5_PHYRMUncharacterized protein. (838 aa)
H3GWN9_PHYRMUncharacterized protein. (427 aa)
H3GWR6_PHYRMWD_REPEATS_REGION domain-containing protein. (764 aa)
H3GYF6_PHYRMUncharacterized protein. (466 aa)
H3GZH0_PHYRMCCHC-type domain-containing protein. (602 aa)
H3GZT7_PHYRMU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (163 aa)
H3H6B8_PHYRMJ domain-containing protein. (512 aa)
H3HAV5_PHYRMSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
H3HB24_PHYRMUncharacterized protein. (229 aa)
H3HB78_PHYRMUncharacterized protein. (62 aa)
H3HBE3_PHYRMSm domain-containing protein. (415 aa)
H3HCQ4_PHYRMUncharacterized protein. (989 aa)
H3HCZ6_PHYRMUncharacterized protein. (227 aa)
H3HEF3_PHYRMUncharacterized protein. (313 aa)
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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