STRINGSTRING
H3G535_PHYRM H3G535_PHYRM H3G542_PHYRM H3G542_PHYRM H3G549_PHYRM H3G549_PHYRM H3G5H2_PHYRM H3G5H2_PHYRM H3G5N3_PHYRM H3G5N3_PHYRM H3G668_PHYRM H3G668_PHYRM H3G7Q5_PHYRM H3G7Q5_PHYRM H3GZT7_PHYRM H3GZT7_PHYRM H3HAV5_PHYRM H3HAV5_PHYRM H3HBE3_PHYRM H3HBE3_PHYRM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H3G535_PHYRMSm domain-containing protein. (78 aa)
H3G542_PHYRMSmall nuclear ribonucleoprotein Sm D3. (85 aa)
H3G549_PHYRMSmall nuclear ribonucleoprotein G. (76 aa)
H3G5H2_PHYRMSmall nuclear ribonucleoprotein Sm D3. (73 aa)
H3G5N3_PHYRMSm domain-containing protein. (88 aa)
H3G668_PHYRMRRM domain-containing protein. (161 aa)
H3G7Q5_PHYRMSmall nuclear ribonucleoprotein Sm D2. (96 aa)
H3GZT7_PHYRMU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (163 aa)
H3HAV5_PHYRMSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
H3HBE3_PHYRMSm domain-containing protein. (415 aa)
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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