31 items (Phytophthora ramorum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G5H0_PHYRM	Uncharacterized protein. (153 aa)
	H3GAL0_PHYRM	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (462 aa)
	H3GBT0_PHYRM	Uncharacterized protein. (842 aa)
	H3GC27_PHYRM	Uncharacterized protein. (220 aa)
	H3GCD4_PHYRM	Uncharacterized protein. (181 aa)
	H3GED3_PHYRM	Uncharacterized protein. (915 aa)
	H3GGN8_PHYRM	Uncharacterized protein. (1094 aa)
	H3GHL1_PHYRM	ACB domain-containing protein. (1499 aa)
	H3GJE3_PHYRM	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (1335 aa)
	H3GR80_PHYRM	Uncharacterized protein. (920 aa)
	H3GS73_PHYRM	Bromo domain-containing protein. (836 aa)
	H3GT71_PHYRM	Vps53_N domain-containing protein. (857 aa)
	H3GT92_PHYRM	WD_REPEATS_REGION domain-containing protein. (309 aa)
	H3GTH6_PHYRM	Uncharacterized protein. (115 aa)
	H3GTY6_PHYRM	Uncharacterized protein. (315 aa)
	H3GVL9_PHYRM	Cog4 domain-containing protein. (844 aa)
	H3GVM1_PHYRM	DUF2451 domain-containing protein. (405 aa)
	H3GVW3_PHYRM	TMF_TATA_bd domain-containing protein. (828 aa)
	H3GYG8_PHYRM	Cog4 domain-containing protein. (674 aa)
	H3GZE6_PHYRM	Uncharacterized protein. (788 aa)
	H3H3E8_PHYRM	Uncharacterized protein. (647 aa)
	H3H733_PHYRM	Uncharacterized protein. (212 aa)
	H3H8D5_PHYRM	Vps54_N domain-containing protein. (201 aa)
	H3HAQ8_PHYRM	Uncharacterized protein. (452 aa)
	H3HAV4_PHYRM	Uncharacterized protein. (1185 aa)
	H3HAW3_PHYRM	Uncharacterized protein. (357 aa)
	H3HBF5_PHYRM	Uncharacterized protein. (378 aa)
	H3HBN8_PHYRM	Rab-GAP TBC domain-containing protein. (378 aa)
	H3HCX5_PHYRM	Rab-GAP TBC domain-containing protein. (465 aa)
	H3HDC1_PHYRM	Vps54_N domain-containing protein. (390 aa)
	H3HDG0_PHYRM	Uncharacterized protein. (181 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5H0_PHYRM	H3GBT0_PHYRM	H3G5H0	H3GBT0	Uncharacterized protein.	Uncharacterized protein.	0.592
H3G5H0_PHYRM	H3GC27_PHYRM	H3G5H0	H3GC27	Uncharacterized protein.	Uncharacterized protein.	0.471
H3G5H0_PHYRM	H3GCD4_PHYRM	H3G5H0	H3GCD4	Uncharacterized protein.	Uncharacterized protein.	0.532
H3G5H0_PHYRM	H3GGN8_PHYRM	H3G5H0	H3GGN8	Uncharacterized protein.	Uncharacterized protein.	0.471
H3G5H0_PHYRM	H3GHL1_PHYRM	H3G5H0	H3GHL1	Uncharacterized protein.	ACB domain-containing protein.	0.694
H3G5H0_PHYRM	H3GJE3_PHYRM	H3G5H0	H3GJE3	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.751
H3G5H0_PHYRM	H3GS73_PHYRM	H3G5H0	H3GS73	Uncharacterized protein.	Bromo domain-containing protein.	0.612
H3G5H0_PHYRM	H3GT71_PHYRM	H3G5H0	H3GT71	Uncharacterized protein.	Vps53_N domain-containing protein.	0.633
H3G5H0_PHYRM	H3GTH6_PHYRM	H3G5H0	H3GTH6	Uncharacterized protein.	Uncharacterized protein.	0.724
H3G5H0_PHYRM	H3GTY6_PHYRM	H3G5H0	H3GTY6	Uncharacterized protein.	Uncharacterized protein.	0.677
H3G5H0_PHYRM	H3GZE6_PHYRM	H3G5H0	H3GZE6	Uncharacterized protein.	Uncharacterized protein.	0.562
H3G5H0_PHYRM	H3HAQ8_PHYRM	H3G5H0	H3HAQ8	Uncharacterized protein.	Uncharacterized protein.	0.797
H3G5H0_PHYRM	H3HAV4_PHYRM	H3G5H0	H3HAV4	Uncharacterized protein.	Uncharacterized protein.	0.594
H3G5H0_PHYRM	H3HAW3_PHYRM	H3G5H0	H3HAW3	Uncharacterized protein.	Uncharacterized protein.	0.532
H3G5H0_PHYRM	H3HDG0_PHYRM	H3G5H0	H3HDG0	Uncharacterized protein.	Uncharacterized protein.	0.750
H3GAL0_PHYRM	H3GC27_PHYRM	H3GAL0	H3GC27	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.939
H3GAL0_PHYRM	H3GGN8_PHYRM	H3GAL0	H3GGN8	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.939
H3GAL0_PHYRM	H3GHL1_PHYRM	H3GAL0	H3GHL1	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	ACB domain-containing protein.	0.683
H3GAL0_PHYRM	H3GTY6_PHYRM	H3GAL0	H3GTY6	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.859
H3GAL0_PHYRM	H3HDG0_PHYRM	H3GAL0	H3HDG0	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.998

page 1 of 27

Server load: low (18%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2025

Credits

Access

Info

About