(18 nodes) P-body network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	H3GHD4_PHYRM	RPOL4c domain-containing protein. (155 aa)
	H3GLK3_PHYRM	MoCF_biosynth domain-containing protein. (1405 aa)
	H3GNM1_PHYRM	Nudix hydrolase domain-containing protein. (429 aa)
	H3H0Y8_PHYRM	Uncharacterized protein. (523 aa)
	H3H6W3_PHYRM	NOT2_3_5 domain-containing protein. (435 aa)
	H3H724_PHYRM	Not3 domain-containing protein. (737 aa)
	H3G596_PHYRM	Uncharacterized protein. (248 aa)
	H3G6P3_PHYRM	Uncharacterized protein. (267 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (118 aa)
	H3G5B7_PHYRM	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	H3G7W8_PHYRM	LSM14 domain-containing protein. (83 aa)
	H3G919_PHYRM	Sm domain-containing protein. (84 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
	H3G996_PHYRM	Uncharacterized protein; Belongs to the DEAD box helicase family. (410 aa)
	H3GB12_PHYRM	Uncharacterized protein. (267 aa)
	H3GBG6_PHYRM	Uncharacterized protein. (245 aa)
	H3GFP6_PHYRM	mRNA_decap_C domain-containing protein. (319 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (122 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G596_PHYRM	H3G6P3_PHYRM	H3G596	H3G6P3	Uncharacterized protein.	Uncharacterized protein.	0.988
H3G596_PHYRM	H3G996_PHYRM	H3G596	H3G996	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.942
H3G596_PHYRM	H3GB12_PHYRM	H3G596	H3GB12	Uncharacterized protein.	Uncharacterized protein.	0.543
H3G596_PHYRM	H3GFP6_PHYRM	H3G596	H3GFP6	Uncharacterized protein.	mRNA_decap_C domain-containing protein.	0.489
H3G596_PHYRM	H3GNM1_PHYRM	H3G596	H3GNM1	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.831
H3G596_PHYRM	H3H0Y8_PHYRM	H3G596	H3H0Y8	Uncharacterized protein.	Uncharacterized protein.	0.948
H3G596_PHYRM	H3H6W3_PHYRM	H3G596	H3H6W3	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.948
H3G596_PHYRM	H3H724_PHYRM	H3G596	H3H724	Uncharacterized protein.	Not3 domain-containing protein.	0.948
H3G5B7_PHYRM	H3G7W8_PHYRM	H3G5B7	H3G7W8	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM14 domain-containing protein.	0.538
H3G5B7_PHYRM	H3G919_PHYRM	H3G5B7	H3G919	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
H3G5B7_PHYRM	H3G996_PHYRM	H3G5B7	H3G996	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.926
H3G5B7_PHYRM	H3GFP6_PHYRM	H3G5B7	H3GFP6	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA_decap_C domain-containing protein.	0.850
H3G5B7_PHYRM	H3GLK3_PHYRM	H3G5B7	H3GLK3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	MoCF_biosynth domain-containing protein.	0.725
H3G5B7_PHYRM	H3GNM1_PHYRM	H3G5B7	H3GNM1	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nudix hydrolase domain-containing protein.	0.856
H3G5B7_PHYRM	LSM1	H3G5B7	H3GH42	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.999
H3G5B7_PHYRM	LSM3	H3G5B7	H3G937	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
H3G5B7_PHYRM	LSM4	H3G5B7	H3G5G4	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
H3G6P3_PHYRM	H3G596_PHYRM	H3G6P3	H3G596	Uncharacterized protein.	Uncharacterized protein.	0.988
H3G6P3_PHYRM	H3G996_PHYRM	H3G6P3	H3G996	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.484
H3G6P3_PHYRM	H3GB12_PHYRM	H3G6P3	H3GB12	Uncharacterized protein.	Uncharacterized protein.	0.988

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