(10 nodes) Prp19 complex network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3HBV5_PHYRM	WD_REPEATS_REGION domain-containing protein. (515 aa)
	H3H995_PHYRM	WD_REPEATS_REGION domain-containing protein. (130 aa)
	H3H1I5_PHYRM	Uncharacterized protein. (213 aa)
	H3GPB1_PHYRM	Uncharacterized protein. (209 aa)
	H3G7L1_PHYRM	Uncharacterized protein. (768 aa)
	H3G9F8_PHYRM	Uncharacterized protein. (693 aa)
	H3G9H3_PHYRM	Suf domain-containing protein. (864 aa)
	H3GNH0_PHYRM	TPR_REGION domain-containing protein. (897 aa)
	H3GBR8_PHYRM	Uncharacterized protein. (218 aa)
	H3GAE9_PHYRM	WD_REPEATS_REGION domain-containing protein. (519 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G7L1_PHYRM	H3G9F8_PHYRM	H3G7L1	H3G9F8	Uncharacterized protein.	Uncharacterized protein.	0.978
H3G7L1_PHYRM	H3G9H3_PHYRM	H3G7L1	H3G9H3	Uncharacterized protein.	Suf domain-containing protein.	0.994
H3G7L1_PHYRM	H3GAE9_PHYRM	H3G7L1	H3GAE9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
H3G7L1_PHYRM	H3GBR8_PHYRM	H3G7L1	H3GBR8	Uncharacterized protein.	Uncharacterized protein.	0.992
H3G7L1_PHYRM	H3GNH0_PHYRM	H3G7L1	H3GNH0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.955
H3G7L1_PHYRM	H3GPB1_PHYRM	H3G7L1	H3GPB1	Uncharacterized protein.	Uncharacterized protein.	0.992
H3G7L1_PHYRM	H3H1I5_PHYRM	H3G7L1	H3H1I5	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G7L1_PHYRM	H3H995_PHYRM	H3G7L1	H3H995	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
H3G7L1_PHYRM	H3HBV5_PHYRM	H3G7L1	H3HBV5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
H3G9F8_PHYRM	H3G7L1_PHYRM	H3G9F8	H3G7L1	Uncharacterized protein.	Uncharacterized protein.	0.978
H3G9F8_PHYRM	H3G9H3_PHYRM	H3G9F8	H3G9H3	Uncharacterized protein.	Suf domain-containing protein.	0.997
H3G9F8_PHYRM	H3GAE9_PHYRM	H3G9F8	H3GAE9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.969
H3G9F8_PHYRM	H3GBR8_PHYRM	H3G9F8	H3GBR8	Uncharacterized protein.	Uncharacterized protein.	0.996
H3G9F8_PHYRM	H3GPB1_PHYRM	H3G9F8	H3GPB1	Uncharacterized protein.	Uncharacterized protein.	0.989
H3G9F8_PHYRM	H3H1I5_PHYRM	H3G9F8	H3H1I5	Uncharacterized protein.	Uncharacterized protein.	0.960
H3G9F8_PHYRM	H3H995_PHYRM	H3G9F8	H3H995	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.924
H3G9F8_PHYRM	H3HBV5_PHYRM	H3G9F8	H3HBV5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.924
H3G9H3_PHYRM	H3G7L1_PHYRM	H3G9H3	H3G7L1	Suf domain-containing protein.	Uncharacterized protein.	0.994
H3G9H3_PHYRM	H3G9F8_PHYRM	H3G9H3	H3G9F8	Suf domain-containing protein.	Uncharacterized protein.	0.997
H3G9H3_PHYRM	H3GAE9_PHYRM	H3G9H3	H3GAE9	Suf domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999

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