(21 nodes) DNA-directed 5-3 RNA polymerase activity network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	H3GA26_PHYRM	RNA_pol_L_2 domain-containing protein. (119 aa)
	H3HE68_PHYRM	RPOL_N domain-containing protein. (999 aa)
	H3HDK0_PHYRM	Uncharacterized protein. (206 aa)
	H3HB20_PHYRM	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (286 aa)
	H3H2T6_PHYRM	Uncharacterized protein. (1943 aa)
	H3H1S7_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1800 aa)
	H3GWJ9_PHYRM	RNA_pol_L_2 domain-containing protein. (109 aa)
	H3GV90_PHYRM	RPOLD domain-containing protein. (376 aa)
	H3GMV0_PHYRM	RPOLD domain-containing protein. (327 aa)
	H3GLH5_PHYRM	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (428 aa)
	H3GK19_PHYRM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (667 aa)
	H3GH55_PHYRM	Nitroreductase domain-containing protein. (281 aa)
	H3GH54_PHYRM	Nitroreductase domain-containing protein. (223 aa)
	H3GGU1_PHYRM	SHS2_Rpb7-N domain-containing protein. (297 aa)
	H3GA07_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1298 aa)
	H3G9F7_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1158 aa)
	H3G8F7_PHYRM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1453 aa)
	H3G821_PHYRM	RNA_pol_L_2 domain-containing protein. (51 aa)
	H3G809_PHYRM	Uncharacterized protein. (64 aa)
	H3G5P5_PHYRM	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1145 aa)
	H3G548_PHYRM	Uncharacterized protein. (114 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G548_PHYRM	H3G5P5_PHYRM	H3G548	H3G5P5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H3G548_PHYRM	H3G809_PHYRM	H3G548	H3G809	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G548_PHYRM	H3G821_PHYRM	H3G548	H3G821	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.989
H3G548_PHYRM	H3G8F7_PHYRM	H3G548	H3G8F7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H3G548_PHYRM	H3G9F7_PHYRM	H3G548	H3G9F7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H3G548_PHYRM	H3GA07_PHYRM	H3G548	H3GA07	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
H3G548_PHYRM	H3GA26_PHYRM	H3G548	H3GA26	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
H3G548_PHYRM	H3GGU1_PHYRM	H3G548	H3GGU1	Uncharacterized protein.	SHS2_Rpb7-N domain-containing protein.	0.967
H3G548_PHYRM	H3GH54_PHYRM	H3G548	H3GH54	Uncharacterized protein.	Nitroreductase domain-containing protein.	0.967
H3G548_PHYRM	H3GH55_PHYRM	H3G548	H3GH55	Uncharacterized protein.	Nitroreductase domain-containing protein.	0.967
H3G548_PHYRM	H3GK19_PHYRM	H3G548	H3GK19	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.990
H3G548_PHYRM	H3GMV0_PHYRM	H3G548	H3GMV0	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
H3G548_PHYRM	H3GV90_PHYRM	H3G548	H3GV90	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
H3G548_PHYRM	H3GWJ9_PHYRM	H3G548	H3GWJ9	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.989
H3G548_PHYRM	H3H1S7_PHYRM	H3G548	H3H1S7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
H3G548_PHYRM	H3H2T6_PHYRM	H3G548	H3H2T6	Uncharacterized protein.	Uncharacterized protein.	0.994
H3G548_PHYRM	H3HB20_PHYRM	H3G548	H3HB20	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.987
H3G548_PHYRM	H3HDK0_PHYRM	H3G548	H3HDK0	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G5P5_PHYRM	H3G548_PHYRM	H3G5P5	H3G548	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
H3G5P5_PHYRM	H3G809_PHYRM	H3G5P5	H3G809	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999

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