(22 nodes) Late endosome network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GYM4_PHYRM	Uncharacterized protein. (2040 aa)
	H3H0X1_PHYRM	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (856 aa)
	H3H2Y2_PHYRM	GLUE N-terminal domain-containing protein. (355 aa)
	H3HAR8_PHYRM	V-SNARE domain-containing protein. (220 aa)
	H3HBR7_PHYRM	Uncharacterized protein. (814 aa)
	H3HDB6_PHYRM	Vta1 domain-containing protein. (216 aa)
	H3HE60_PHYRM	Uncharacterized protein. (301 aa)
	H3GIG8_PHYRM	Uncharacterized protein. (1036 aa)
	H3GIA4_PHYRM	Uncharacterized protein. (254 aa)
	H3GIM7_PHYRM	Uncharacterized protein. (559 aa)
	H3GL64_PHYRM	VPS37 C-terminal domain-containing protein. (348 aa)
	H3GCF5_PHYRM	V-SNARE domain-containing protein. (219 aa)
	H3GM76_PHYRM	t-SNARE coiled-coil homology domain-containing protein. (208 aa)
	H3G8P7_PHYRM	Uncharacterized protein. (209 aa)
	H3GR77_PHYRM	Uncharacterized protein. (203 aa)
	H3GR78_PHYRM	Uncharacterized protein. (102 aa)
	H3GRN0_PHYRM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	H3GT40_PHYRM	WD_REPEATS_REGION domain-containing protein. (2343 aa)
	H3GUD2_PHYRM	Uncharacterized protein. (2129 aa)
	H3GVB9_PHYRM	Med13_N domain-containing protein. (1351 aa)
	H3GWN3_PHYRM	DAO domain-containing protein. (610 aa)
	H3GWU4_PHYRM	Uncharacterized protein. (228 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G8P7_PHYRM	H3GL64_PHYRM	H3G8P7	H3GL64	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.719
H3G8P7_PHYRM	H3GWU4_PHYRM	H3G8P7	H3GWU4	Uncharacterized protein.	Uncharacterized protein.	0.980
H3G8P7_PHYRM	H3H2Y2_PHYRM	H3G8P7	H3H2Y2	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.725
H3G8P7_PHYRM	H3HDB6_PHYRM	H3G8P7	H3HDB6	Uncharacterized protein.	Vta1 domain-containing protein.	0.998
H3GCF5_PHYRM	H3GIA4_PHYRM	H3GCF5	H3GIA4	V-SNARE domain-containing protein.	Uncharacterized protein.	0.567
H3GCF5_PHYRM	H3GIG8_PHYRM	H3GCF5	H3GIG8	V-SNARE domain-containing protein.	Uncharacterized protein.	0.819
H3GCF5_PHYRM	H3GM76_PHYRM	H3GCF5	H3GM76	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.952
H3GCF5_PHYRM	H3GVB9_PHYRM	H3GCF5	H3GVB9	V-SNARE domain-containing protein.	Med13_N domain-containing protein.	0.540
H3GCF5_PHYRM	H3HAR8_PHYRM	H3GCF5	H3HAR8	V-SNARE domain-containing protein.	V-SNARE domain-containing protein.	0.952
H3GIA4_PHYRM	H3GCF5_PHYRM	H3GIA4	H3GCF5	Uncharacterized protein.	V-SNARE domain-containing protein.	0.567
H3GIA4_PHYRM	H3GM76_PHYRM	H3GIA4	H3GM76	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.567
H3GIA4_PHYRM	H3GVB9_PHYRM	H3GIA4	H3GVB9	Uncharacterized protein.	Med13_N domain-containing protein.	0.567
H3GIA4_PHYRM	H3HAR8_PHYRM	H3GIA4	H3HAR8	Uncharacterized protein.	V-SNARE domain-containing protein.	0.567
H3GIG8_PHYRM	H3GCF5_PHYRM	H3GIG8	H3GCF5	Uncharacterized protein.	V-SNARE domain-containing protein.	0.819
H3GIG8_PHYRM	H3GIM7_PHYRM	H3GIG8	H3GIM7	Uncharacterized protein.	Uncharacterized protein.	0.948
H3GIG8_PHYRM	H3GM76_PHYRM	H3GIG8	H3GM76	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.819
H3GIG8_PHYRM	H3GR77_PHYRM	H3GIG8	H3GR77	Uncharacterized protein.	Uncharacterized protein.	0.931
H3GIG8_PHYRM	H3GR78_PHYRM	H3GIG8	H3GR78	Uncharacterized protein.	Uncharacterized protein.	0.931
H3GIG8_PHYRM	H3GT40_PHYRM	H3GIG8	H3GT40	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.797
H3GIG8_PHYRM	H3GVB9_PHYRM	H3GIG8	H3GVB9	Uncharacterized protein.	Med13_N domain-containing protein.	0.819

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