(80 nodes) Negative regulation of gene expression network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GYV2_PHYRM	Uncharacterized protein. (161 aa)
	H3GZT5_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (318 aa)
	H3H008_PHYRM	Hat1_N domain-containing protein. (397 aa)
	H3H0P3_PHYRM	Uncharacterized protein. (276 aa)
	H3H0V6_PHYRM	Uncharacterized protein. (455 aa)
	H3H0Y8_PHYRM	Uncharacterized protein. (523 aa)
	H3H2I9_PHYRM	Smg4_UPF3 domain-containing protein. (432 aa)
	H3H3A9_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (328 aa)
	H3H3B0_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (299 aa)
	H3H3C2_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (464 aa)
	H3H6W3_PHYRM	NOT2_3_5 domain-containing protein. (435 aa)
	H3H724_PHYRM	Not3 domain-containing protein. (737 aa)
	H3H7I2_PHYRM	PAZ domain-containing protein. (270 aa)
	H3H809_PHYRM	Uncharacterized protein. (147 aa)
	H3H810_PHYRM	Uncharacterized protein. (161 aa)
	H3HA42_PHYRM	HRDC domain-containing protein. (723 aa)
	H3HB56_PHYRM	Uncharacterized protein. (602 aa)
	H3HDJ4_PHYRM	Uncharacterized protein. (1549 aa)
	H3HDJ6_PHYRM	Helicase ATP-binding domain-containing protein. (520 aa)
	H3HBU6_PHYRM	Uncharacterized protein. (1854 aa)
	H3HC96_PHYRM	Uncharacterized protein. (220 aa)
	H3HCL6_PHYRM	Uncharacterized protein; Belongs to the argonaute family. (1039 aa)
	H3HCX7_PHYRM	Uncharacterized protein. (1249 aa)
	H3GJZ2_PHYRM	Uncharacterized protein. (895 aa)
	H3GKN4_PHYRM	RNase_PH domain-containing protein. (601 aa)
	H3GL78_PHYRM	RAI1 domain-containing protein. (331 aa)
	H3GLK3_PHYRM	MoCF_biosynth domain-containing protein. (1405 aa)
	H3GLT2_PHYRM	Uncharacterized protein. (670 aa)
	H3GLZ7_PHYRM	Uncharacterized protein. (1357 aa)
	H3GMP6_PHYRM	Uncharacterized protein. (898 aa)
	H3GMT6_PHYRM	Uncharacterized protein. (153 aa)
	H3GND3_PHYRM	Uncharacterized protein. (1612 aa)
	H3GNM1_PHYRM	Nudix hydrolase domain-containing protein. (429 aa)
	H3GNS6_PHYRM	Uncharacterized protein. (1462 aa)
	H3GS09_PHYRM	Uncharacterized protein. (366 aa)
	H3GS59_PHYRM	Uncharacterized protein. (1057 aa)
	H3GSI3_PHYRM	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1001 aa)
	H3GSY0_PHYRM	Uncharacterized protein. (3860 aa)
	H3GTA4_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (578 aa)
	H3GUY1_PHYRM	Uncharacterized protein. (2738 aa)
	H3GV34_PHYRM	Uncharacterized protein. (252 aa)
	H3GVW3_PHYRM	TMF_TATA_bd domain-containing protein. (828 aa)
	H3GWY3_PHYRM	Uncharacterized protein. (359 aa)
	H3GX87_PHYRM	Uncharacterized protein. (282 aa)
	H3GYV1_PHYRM	Uncharacterized protein. (161 aa)
	H3GYV3_PHYRM	Uncharacterized protein. (214 aa)
	H3G527_PHYRM	Piwi domain-containing protein. (127 aa)
	H3G590_PHYRM	S1 motif domain-containing protein. (703 aa)
	H3G596_PHYRM	Uncharacterized protein. (248 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (118 aa)
	H3G5R3_PHYRM	Uncharacterized protein. (830 aa)
	H3G6M7_PHYRM	Nuclear cap-binding protein subunit 2. (121 aa)
	H3G6P3_PHYRM	Uncharacterized protein. (267 aa)
	H3G7B0_PHYRM	Uncharacterized protein. (334 aa)
	H3G8D4_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	H3G8P4_PHYRM	Sm domain-containing protein. (105 aa)
	H3G8R9_PHYRM	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (406 aa)
	H3G8X3_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (140 aa)
	H3G8Z9_PHYRM	Piwi domain-containing protein. (208 aa)
	H3G996_PHYRM	Uncharacterized protein; Belongs to the DEAD box helicase family. (410 aa)
	H3G9L3_PHYRM	RRM domain-containing protein. (159 aa)
	H3G9T8_PHYRM	S1 domain-containing protein. (290 aa)
	H3GA64_PHYRM	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (234 aa)
	H3GB12_PHYRM	Uncharacterized protein. (267 aa)
	H3GBG6_PHYRM	Uncharacterized protein. (245 aa)
	H3GCB3_PHYRM	Uncharacterized protein. (295 aa)
	H3GE26_PHYRM	YTH domain-containing protein. (222 aa)
	H3GEF9_PHYRM	C2H2-type domain-containing protein. (729 aa)
	H3GF99_PHYRM	Piwi domain-containing protein. (460 aa)
	H3GFB9_PHYRM	PAZ domain-containing protein. (270 aa)
	H3GFI8_PHYRM	TPR_REGION domain-containing protein. (693 aa)
	H3GFP6_PHYRM	mRNA_decap_C domain-containing protein. (319 aa)
	H3GG22_PHYRM	Uncharacterized protein. (700 aa)
	H3GGQ2_PHYRM	Fibronectin type-III domain-containing protein. (601 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (122 aa)
	H3GHB5_PHYRM	RING-type domain-containing protein. (428 aa)
	H3GHD4_PHYRM	RPOL4c domain-containing protein. (155 aa)
	H3GI95_PHYRM	Uncharacterized protein. (311 aa)
	H3GJX3_PHYRM	Uncharacterized protein. (982 aa)
	H3GJZ0_PHYRM	Uncharacterized protein; Belongs to the argonaute family. (1137 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G527_PHYRM	H3G996_PHYRM	H3G527	H3G996	Piwi domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.495
H3G527_PHYRM	H3GFB9_PHYRM	H3G527	H3GFB9	Piwi domain-containing protein.	PAZ domain-containing protein.	0.510
H3G527_PHYRM	H3GHD4_PHYRM	H3G527	H3GHD4	Piwi domain-containing protein.	RPOL4c domain-containing protein.	0.465
H3G527_PHYRM	H3GJX3_PHYRM	H3G527	H3GJX3	Piwi domain-containing protein.	Uncharacterized protein.	0.693
H3G527_PHYRM	H3GLZ7_PHYRM	H3G527	H3GLZ7	Piwi domain-containing protein.	Uncharacterized protein.	0.536
H3G527_PHYRM	H3GS09_PHYRM	H3G527	H3GS09	Piwi domain-containing protein.	Uncharacterized protein.	0.712
H3G527_PHYRM	H3GS59_PHYRM	H3G527	H3GS59	Piwi domain-containing protein.	Uncharacterized protein.	0.712
H3G527_PHYRM	H3GWY3_PHYRM	H3G527	H3GWY3	Piwi domain-containing protein.	Uncharacterized protein.	0.761
H3G527_PHYRM	H3H7I2_PHYRM	H3G527	H3H7I2	Piwi domain-containing protein.	PAZ domain-containing protein.	0.506
H3G527_PHYRM	H3HCX7_PHYRM	H3G527	H3HCX7	Piwi domain-containing protein.	Uncharacterized protein.	0.761
H3G527_PHYRM	H3HDJ6_PHYRM	H3G527	H3HDJ6	Piwi domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.761
H3G590_PHYRM	H3G996_PHYRM	H3G590	H3G996	S1 motif domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.522
H3G590_PHYRM	H3GA64_PHYRM	H3G590	H3GA64	S1 motif domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.562
H3G590_PHYRM	H3GKN4_PHYRM	H3G590	H3GKN4	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.537
H3G590_PHYRM	H3GV34_PHYRM	H3G590	H3GV34	S1 motif domain-containing protein.	Uncharacterized protein.	0.542
H3G590_PHYRM	H3H0P3_PHYRM	H3G590	H3H0P3	S1 motif domain-containing protein.	Uncharacterized protein.	0.542
H3G590_PHYRM	H3HA42_PHYRM	H3G590	H3HA42	S1 motif domain-containing protein.	HRDC domain-containing protein.	0.661
H3G596_PHYRM	H3G6P3_PHYRM	H3G596	H3G6P3	Uncharacterized protein.	Uncharacterized protein.	0.988
H3G596_PHYRM	H3G996_PHYRM	H3G596	H3G996	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.942
H3G596_PHYRM	H3GB12_PHYRM	H3G596	H3GB12	Uncharacterized protein.	Uncharacterized protein.	0.543

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