(29 nodes) Small ribosomal subunit network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G6N3_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (148 aa)
	H3G7Q8_PHYRM	AB hydrolase-1 domain-containing protein. (272 aa)
	H3G844_PHYRM	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (104 aa)
	H3G850_PHYRM	S10_plectin domain-containing protein. (144 aa)
	H3G898_PHYRM	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (261 aa)
	H3G8P8_PHYRM	Uncharacterized protein. (154 aa)
	H3G8T5_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	H3G8V6_PHYRM	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	H3G940_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (155 aa)
	H3G949_PHYRM	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (262 aa)
	H3G9T2_PHYRM	KH type-2 domain-containing protein. (236 aa)
	H3G9W8_PHYRM	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (190 aa)
	H3GAD4_PHYRM	Ribosomal_S17_N domain-containing protein. (152 aa)
	H3GAE0_PHYRM	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (138 aa)
	H3GAN3_PHYRM	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (196 aa)
	H3GAS8_PHYRM	Ribosomal_S10 domain-containing protein. (120 aa)
	H3GAY1_PHYRM	Ribosomal_S17_N domain-containing protein. (160 aa)
	H3GH28_PHYRM	WD_REPEATS_REGION domain-containing protein. (986 aa)
	H3GI44_PHYRM	Uncharacterized protein. (776 aa)
	H3GIH3_PHYRM	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (312 aa)
	H3GLR2_PHYRM	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (620 aa)
	H3GU44_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	H3H4G2_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (325 aa)
	H3GV22_PHYRM	Uncharacterized protein. (773 aa)
	H3G5A1_PHYRM	Uncharacterized protein. (59 aa)
	H3G5G7_PHYRM	WD_REPEATS_REGION domain-containing protein. (317 aa)
	H3G5I3_PHYRM	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (101 aa)
	H3G699_PHYRM	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (203 aa)
	H3G6J0_PHYRM	Uncharacterized protein. (87 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5A1_PHYRM	H3G5G7_PHYRM	H3G5A1	H3G5G7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.984
H3G5A1_PHYRM	H3G5I3_PHYRM	H3G5A1	H3G5I3	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
H3G5A1_PHYRM	H3G699_PHYRM	H3G5A1	H3G699	Uncharacterized protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
H3G5A1_PHYRM	H3G6N3_PHYRM	H3G5A1	H3G6N3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.999
H3G5A1_PHYRM	H3G844_PHYRM	H3G5A1	H3G844	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
H3G5A1_PHYRM	H3G850_PHYRM	H3G5A1	H3G850	Uncharacterized protein.	S10_plectin domain-containing protein.	0.999
H3G5A1_PHYRM	H3G898_PHYRM	H3G5A1	H3G898	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
H3G5A1_PHYRM	H3G8P8_PHYRM	H3G5A1	H3G8P8	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G5A1_PHYRM	H3G8T5_PHYRM	H3G5A1	H3G8T5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.997
H3G5A1_PHYRM	H3G8V6_PHYRM	H3G5A1	H3G8V6	Uncharacterized protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
H3G5A1_PHYRM	H3G940_PHYRM	H3G5A1	H3G940	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
H3G5A1_PHYRM	H3G949_PHYRM	H3G5A1	H3G949	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
H3G5A1_PHYRM	H3G9T2_PHYRM	H3G5A1	H3G9T2	Uncharacterized protein.	KH type-2 domain-containing protein.	0.999
H3G5A1_PHYRM	H3G9W8_PHYRM	H3G5A1	H3G9W8	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
H3G5A1_PHYRM	H3GAD4_PHYRM	H3G5A1	H3GAD4	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein.	0.997
H3G5A1_PHYRM	H3GAE0_PHYRM	H3G5A1	H3GAE0	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
H3G5A1_PHYRM	H3GAN3_PHYRM	H3G5A1	H3GAN3	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
H3G5A1_PHYRM	H3GAS8_PHYRM	H3G5A1	H3GAS8	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.999
H3G5A1_PHYRM	H3GAY1_PHYRM	H3G5A1	H3GAY1	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein.	0.997
H3G5A1_PHYRM	H3GH28_PHYRM	H3G5A1	H3GH28	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.984

page 1 of 35

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About