(59 nodes) Endosomal transport network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G8P7_PHYRM	Uncharacterized protein. (209 aa)
	H3G8M6_PHYRM	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (243 aa)
	H3G7R1_PHYRM	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (523 aa)
	H3HE77_PHYRM	Uncharacterized protein. (494 aa)
	H3HE76_PHYRM	Uncharacterized protein. (479 aa)
	H3HDC1_PHYRM	Vps54_N domain-containing protein. (390 aa)
	H3HDB6_PHYRM	Vta1 domain-containing protein. (216 aa)
	H3HD80_PHYRM	FYVE-type domain-containing protein. (398 aa)
	H3HB69_PHYRM	Uncharacterized protein. (522 aa)
	H3HAV4_PHYRM	Uncharacterized protein. (1185 aa)
	H3H9E0_PHYRM	Uncharacterized protein. (137 aa)
	H3H8D5_PHYRM	Vps54_N domain-containing protein. (201 aa)
	H3H828_PHYRM	Uncharacterized protein. (132 aa)
	H3H7G0_PHYRM	Uncharacterized protein. (263 aa)
	H3H4P1_PHYRM	Uncharacterized protein. (927 aa)
	H3H4G3_PHYRM	Uncharacterized protein. (255 aa)
	H3H2Y2_PHYRM	GLUE N-terminal domain-containing protein. (355 aa)
	H3H2V9_PHYRM	Uncharacterized protein. (527 aa)
	H3H1T7_PHYRM	Uncharacterized protein. (574 aa)
	H3H1I2_PHYRM	Uncharacterized protein. (299 aa)
	H3H1D7_PHYRM	FYVE-type domain-containing protein. (777 aa)
	H3H1A1_PHYRM	Uncharacterized protein. (785 aa)
	H3H0X1_PHYRM	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (856 aa)
	H3H0J9_PHYRM	FYVE-type domain-containing protein. (595 aa)
	H3GZB6_PHYRM	Uncharacterized protein. (148 aa)
	H3GYB8_PHYRM	Uncharacterized protein; Belongs to the VPS16 family. (869 aa)
	H3GY27_PHYRM	FYVE-type domain-containing protein. (1098 aa)
	H3GWU4_PHYRM	Uncharacterized protein. (228 aa)
	H3GWN3_PHYRM	DAO domain-containing protein. (610 aa)
	H3GW86_PHYRM	PX domain-containing protein. (641 aa)
	H3GVN5_PHYRM	PX domain-containing protein. (309 aa)
	H3GVM1_PHYRM	DUF2451 domain-containing protein. (405 aa)
	H3GVH5_PHYRM	Uncharacterized protein. (1176 aa)
	H3GUV0_PHYRM	FYVE-type domain-containing protein. (295 aa)
	H3GU27_PHYRM	Uncharacterized protein. (1307 aa)
	H3GT71_PHYRM	Vps53_N domain-containing protein. (857 aa)
	H3GS73_PHYRM	Bromo domain-containing protein. (836 aa)
	H3GR93_PHYRM	Uncharacterized protein. (771 aa)
	H3GNR2_PHYRM	Uncharacterized protein. (664 aa)
	H3GNQ7_PHYRM	Uncharacterized protein. (1352 aa)
	H3GLN7_PHYRM	Uncharacterized protein. (431 aa)
	H3GLI4_PHYRM	Uncharacterized protein. (660 aa)
	H3GJX4_PHYRM	Uncharacterized protein. (580 aa)
	H3GHL1_PHYRM	ACB domain-containing protein. (1499 aa)
	H3GHD1_PHYRM	Uncharacterized protein. (736 aa)
	H3GGU9_PHYRM	Uncharacterized protein. (1180 aa)
	H3GGG2_PHYRM	Uncharacterized protein. (1364 aa)
	H3GFS7_PHYRM	FPL domain-containing protein. (294 aa)
	H3GEB9_PHYRM	WASH_WAHD domain-containing protein. (593 aa)
	H3GDY0_PHYRM	Uncharacterized protein. (1890 aa)
	H3GD76_PHYRM	Uncharacterized protein. (732 aa)
	H3GD54_PHYRM	Uncharacterized protein. (266 aa)
	H3GD27_PHYRM	Uncharacterized protein. (303 aa)
	H3GBT0_PHYRM	Uncharacterized protein. (842 aa)
	H3GBI6_PHYRM	FYVE-type domain-containing protein. (516 aa)
	H3GA82_PHYRM	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (187 aa)
	H3GA44_PHYRM	Uncharacterized protein; Belongs to the AAA ATPase family. (424 aa)
	H3G9P1_PHYRM	Uncharacterized protein. (232 aa)
	H3G8V1_PHYRM	Uncharacterized protein. (139 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G8M6_PHYRM	H3G8P7_PHYRM	H3G8M6	H3G8P7	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Uncharacterized protein.	0.735
H3G8M6_PHYRM	H3G9P1_PHYRM	H3G8M6	H3G9P1	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Uncharacterized protein.	0.911
H3G8M6_PHYRM	H3GA44_PHYRM	H3G8M6	H3GA44	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.584
H3G8M6_PHYRM	H3GD54_PHYRM	H3G8M6	H3GD54	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Uncharacterized protein.	0.948
H3G8M6_PHYRM	H3GR93_PHYRM	H3G8M6	H3GR93	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Uncharacterized protein.	0.987
H3G8M6_PHYRM	H3GWU4_PHYRM	H3G8M6	H3GWU4	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Uncharacterized protein.	0.428
H3G8M6_PHYRM	H3H2Y2_PHYRM	H3G8M6	H3H2Y2	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	GLUE N-terminal domain-containing protein.	0.990
H3G8M6_PHYRM	H3H4G3_PHYRM	H3G8M6	H3H4G3	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Uncharacterized protein.	0.893
H3G8M6_PHYRM	H3HDB6_PHYRM	H3G8M6	H3HDB6	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Vta1 domain-containing protein.	0.427
H3G8P7_PHYRM	H3G8M6_PHYRM	H3G8P7	H3G8M6	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.735
H3G8P7_PHYRM	H3G9P1_PHYRM	H3G8P7	H3G9P1	Uncharacterized protein.	Uncharacterized protein.	0.999
H3G8P7_PHYRM	H3GA44_PHYRM	H3G8P7	H3GA44	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.994
H3G8P7_PHYRM	H3GD54_PHYRM	H3G8P7	H3GD54	Uncharacterized protein.	Uncharacterized protein.	0.724
H3G8P7_PHYRM	H3GR93_PHYRM	H3G8P7	H3GR93	Uncharacterized protein.	Uncharacterized protein.	0.618
H3G8P7_PHYRM	H3GWU4_PHYRM	H3G8P7	H3GWU4	Uncharacterized protein.	Uncharacterized protein.	0.980
H3G8P7_PHYRM	H3H2Y2_PHYRM	H3G8P7	H3H2Y2	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.725
H3G8P7_PHYRM	H3H4G3_PHYRM	H3G8P7	H3H4G3	Uncharacterized protein.	Uncharacterized protein.	0.990
H3G8P7_PHYRM	H3HDB6_PHYRM	H3G8P7	H3HDB6	Uncharacterized protein.	Vta1 domain-containing protein.	0.998
H3G9P1_PHYRM	H3G8M6_PHYRM	H3G9P1	H3G8M6	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.911
H3G9P1_PHYRM	H3G8P7_PHYRM	H3G9P1	H3G8P7	Uncharacterized protein.	Uncharacterized protein.	0.999

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