(30 nodes) Negative regulation of translation network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3H3A9_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (328 aa)
	H3H3B0_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (299 aa)
	H3H3C2_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (464 aa)
	H3H6W3_PHYRM	NOT2_3_5 domain-containing protein. (435 aa)
	H3H724_PHYRM	Not3 domain-containing protein. (737 aa)
	H3HB56_PHYRM	Uncharacterized protein. (602 aa)
	H3G6P3_PHYRM	Uncharacterized protein. (267 aa)
	H3GFP6_PHYRM	mRNA_decap_C domain-containing protein. (319 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (122 aa)
	H3GHD4_PHYRM	RPOL4c domain-containing protein. (155 aa)
	H3GI95_PHYRM	Uncharacterized protein. (311 aa)
	H3GFI8_PHYRM	TPR_REGION domain-containing protein. (693 aa)
	H3GE26_PHYRM	YTH domain-containing protein. (222 aa)
	H3GMT6_PHYRM	Uncharacterized protein. (153 aa)
	H3GNM1_PHYRM	Nudix hydrolase domain-containing protein. (429 aa)
	H3GTA4_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (578 aa)
	H3GUY1_PHYRM	Uncharacterized protein. (2738 aa)
	H3GX87_PHYRM	Uncharacterized protein. (282 aa)
	H3GZT5_PHYRM	Endo/exonuclease/phosphatase domain-containing protein. (318 aa)
	H3H0V6_PHYRM	Uncharacterized protein. (455 aa)
	H3H0Y8_PHYRM	Uncharacterized protein. (523 aa)
	H3GB12_PHYRM	Uncharacterized protein. (267 aa)
	H3G9T8_PHYRM	S1 domain-containing protein. (290 aa)
	H3G996_PHYRM	Uncharacterized protein; Belongs to the DEAD box helicase family. (410 aa)
	H3G8X3_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (140 aa)
	H3G8D4_PHYRM	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	H3G596_PHYRM	Uncharacterized protein. (248 aa)
	H3GGQ2_PHYRM	Fibronectin type-III domain-containing protein. (601 aa)
	H3GCB3_PHYRM	Uncharacterized protein. (295 aa)
	H3GBG6_PHYRM	Uncharacterized protein. (245 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G596_PHYRM	H3G6P3_PHYRM	H3G596	H3G6P3	Uncharacterized protein.	Uncharacterized protein.	0.988
H3G596_PHYRM	H3G996_PHYRM	H3G596	H3G996	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.942
H3G596_PHYRM	H3GB12_PHYRM	H3G596	H3GB12	Uncharacterized protein.	Uncharacterized protein.	0.543
H3G596_PHYRM	H3GE26_PHYRM	H3G596	H3GE26	Uncharacterized protein.	YTH domain-containing protein.	0.712
H3G596_PHYRM	H3GFI8_PHYRM	H3G596	H3GFI8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.934
H3G596_PHYRM	H3GFP6_PHYRM	H3G596	H3GFP6	Uncharacterized protein.	mRNA_decap_C domain-containing protein.	0.489
H3G596_PHYRM	H3GGQ2_PHYRM	H3G596	H3GGQ2	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.839
H3G596_PHYRM	H3GNM1_PHYRM	H3G596	H3GNM1	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.831
H3G596_PHYRM	H3GTA4_PHYRM	H3G596	H3GTA4	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.839
H3G596_PHYRM	H3GUY1_PHYRM	H3G596	H3GUY1	Uncharacterized protein.	Uncharacterized protein.	0.987
H3G596_PHYRM	H3GZT5_PHYRM	H3G596	H3GZT5	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.839
H3G596_PHYRM	H3H0V6_PHYRM	H3G596	H3H0V6	Uncharacterized protein.	Uncharacterized protein.	0.936
H3G596_PHYRM	H3H0Y8_PHYRM	H3G596	H3H0Y8	Uncharacterized protein.	Uncharacterized protein.	0.948
H3G596_PHYRM	H3H3A9_PHYRM	H3G596	H3H3A9	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.839
H3G596_PHYRM	H3H3B0_PHYRM	H3G596	H3H3B0	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.839
H3G596_PHYRM	H3H3C2_PHYRM	H3G596	H3H3C2	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.839
H3G596_PHYRM	H3H6W3_PHYRM	H3G596	H3H6W3	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.948
H3G596_PHYRM	H3H724_PHYRM	H3G596	H3H724	Uncharacterized protein.	Not3 domain-containing protein.	0.948
H3G596_PHYRM	H3HB56_PHYRM	H3G596	H3HB56	Uncharacterized protein.	Uncharacterized protein.	0.922
H3G6P3_PHYRM	H3G596_PHYRM	H3G6P3	H3G596	Uncharacterized protein.	Uncharacterized protein.	0.988

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