(59 nodes) Dynein complex network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3GWL6_PHYRM	Uncharacterized protein. (455 aa)
	H3G6G1_PHYRM	Uncharacterized protein. (3929 aa)
	H3G5Y5_PHYRM	Dynein light chain. (81 aa)
	H3G5T3_PHYRM	Uncharacterized protein. (1246 aa)
	H3G5K7_PHYRM	WD_REPEATS_REGION domain-containing protein. (299 aa)
	H3G5G2_PHYRM	Uncharacterized protein. (98 aa)
	H3G5A0_PHYRM	Dynein light chain. (96 aa)
	H3G594_PHYRM	Uncharacterized protein. (99 aa)
	H3HDY6_PHYRM	Uncharacterized protein. (2893 aa)
	H3HCI1_PHYRM	CAP-Gly domain-containing protein. (656 aa)
	H3HCG5_PHYRM	Uncharacterized protein. (4252 aa)
	H3HCG0_PHYRM	Dynein light chain. (95 aa)
	H3HBY2_PHYRM	Uncharacterized protein. (3396 aa)
	H3HBP5_PHYRM	Uncharacterized protein. (4096 aa)
	H3GUI5_PHYRM	Uncharacterized protein. (605 aa)
	H3GU85_PHYRM	Uncharacterized protein. (683 aa)
	H3GR96_PHYRM	Uncharacterized protein. (4996 aa)
	H3GPT6_PHYRM	Uncharacterized protein. (293 aa)
	H3GPP1_PHYRM	SBF2 domain-containing protein. (1061 aa)
	H3GM82_PHYRM	Uncharacterized protein. (4708 aa)
	H3GKD8_PHYRM	Uncharacterized protein. (107 aa)
	H3GJS6_PHYRM	DHC_N2 domain-containing protein. (1367 aa)
	H3GJP3_PHYRM	CAP-Gly domain-containing protein. (1335 aa)
	H3GHN7_PHYRM	Dynein light chain. (103 aa)
	H3GEN5_PHYRM	Uncharacterized protein. (4838 aa)
	H3GEJ8_PHYRM	Dynein light chain roadblock. (101 aa)
	H3GD25_PHYRM	Uncharacterized protein. (1313 aa)
	H3GAG4_PHYRM	Dynein light chain. (89 aa)
	H3GAA7_PHYRM	WD_REPEATS_REGION domain-containing protein. (591 aa)
	H3GA36_PHYRM	Uncharacterized protein. (1706 aa)
	H3G9Y8_PHYRM	Uncharacterized protein. (3402 aa)
	H3G9V8_PHYRM	Uncharacterized protein. (259 aa)
	H3HAT7_PHYRM	Uncharacterized protein. (1155 aa)
	H3HA68_PHYRM	Uncharacterized protein. (124 aa)
	H3H9T7_PHYRM	Uncharacterized protein. (124 aa)
	H3H8D2_PHYRM	Uncharacterized protein. (546 aa)
	H3H7I0_PHYRM	Uncharacterized protein. (213 aa)
	H3H541_PHYRM	Robl_LC7 domain-containing protein. (135 aa)
	H3H1T8_PHYRM	WD_REPEATS_REGION domain-containing protein. (750 aa)
	H3H199_PHYRM	Uncharacterized protein. (125 aa)
	H3H0F6_PHYRM	WD_REPEATS_REGION domain-containing protein. (1430 aa)
	H3GZE5_PHYRM	Uncharacterized protein. (704 aa)
	H3GY05_PHYRM	Uncharacterized protein. (736 aa)
	H3GVF4_PHYRM	Uncharacterized protein. (383 aa)
	H3GW91_PHYRM	Uncharacterized protein. (100 aa)
	H3GWG8_PHYRM	Uncharacterized protein. (293 aa)
	H3GWG9_PHYRM	DHC_N1 domain-containing protein. (659 aa)
	H3GWH1_PHYRM	Uncharacterized protein. (294 aa)
	H3GWH2_PHYRM	Uncharacterized protein. (2881 aa)
	H3GXS3_PHYRM	Uncharacterized protein. (5257 aa)
	H3G8Z8_PHYRM	Uncharacterized protein. (600 aa)
	H3G8E7_PHYRM	Uncharacterized protein. (4441 aa)
	H3G869_PHYRM	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (842 aa)
	H3G807_PHYRM	Dynein light chain roadblock. (94 aa)
	H3G7W0_PHYRM	Dynein light chain. (86 aa)
	H3G7F9_PHYRM	Uncharacterized protein. (2899 aa)
	H3G776_PHYRM	Uncharacterized protein. (2379 aa)
	H3G6P6_PHYRM	Uncharacterized protein. (3540 aa)
	H3G6N0_PHYRM	Uncharacterized protein. (4455 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G594_PHYRM	H3G5A0_PHYRM	H3G594	H3G5A0	Uncharacterized protein.	Dynein light chain.	0.764
H3G594_PHYRM	H3G5G2_PHYRM	H3G594	H3G5G2	Uncharacterized protein.	Uncharacterized protein.	0.565
H3G594_PHYRM	H3G5K7_PHYRM	H3G594	H3G5K7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.783
H3G594_PHYRM	H3G5T3_PHYRM	H3G594	H3G5T3	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3G5Y5_PHYRM	H3G594	H3G5Y5	Uncharacterized protein.	Dynein light chain.	0.886
H3G594_PHYRM	H3G6G1_PHYRM	H3G594	H3G6G1	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3G6N0_PHYRM	H3G594	H3G6N0	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3G6P6_PHYRM	H3G594	H3G6P6	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3G776_PHYRM	H3G594	H3G776	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3G7F9_PHYRM	H3G594	H3G7F9	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3G7W0_PHYRM	H3G594	H3G7W0	Uncharacterized protein.	Dynein light chain.	0.886
H3G594_PHYRM	H3G807_PHYRM	H3G594	H3G807	Uncharacterized protein.	Dynein light chain roadblock.	0.927
H3G594_PHYRM	H3G869_PHYRM	H3G594	H3G869	Uncharacterized protein.	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	0.764
H3G594_PHYRM	H3G8E7_PHYRM	H3G594	H3G8E7	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3G8Z8_PHYRM	H3G594	H3G8Z8	Uncharacterized protein.	Uncharacterized protein.	0.668
H3G594_PHYRM	H3G9Y8_PHYRM	H3G594	H3G9Y8	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3GA36_PHYRM	H3G594	H3GA36	Uncharacterized protein.	Uncharacterized protein.	0.598
H3G594_PHYRM	H3GAA7_PHYRM	H3G594	H3GAA7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.783
H3G594_PHYRM	H3GAG4_PHYRM	H3G594	H3GAG4	Uncharacterized protein.	Dynein light chain.	0.886
H3G594_PHYRM	H3GEJ8_PHYRM	H3G594	H3GEJ8	Uncharacterized protein.	Dynein light chain roadblock.	0.927

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