(33 nodes) Ubiquitin-dependent ERAD pathway network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

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protein homology

Your Input:
	H3H6E5_PHYRM	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (305 aa)
	H3H2J8_PHYRM	Uncharacterized protein. (554 aa)
	H3H037_PHYRM	UBX domain-containing protein. (394 aa)
	H3GZ70_PHYRM	Ubiquitin-like domain-containing protein. (822 aa)
	H3GXV1_PHYRM	PRKCSH domain-containing protein. (444 aa)
	H3GQS8_PHYRM	OTU domain-containing protein. (271 aa)
	H3GQL5_PHYRM	Uncharacterized protein. (1376 aa)
	H3GQL4_PHYRM	Uncharacterized protein. (284 aa)
	H3GNQ2_PHYRM	Ubiquitin-like domain-containing protein. (855 aa)
	H3GMU8_PHYRM	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (251 aa)
	H3GML2_PHYRM	TPR_REGION domain-containing protein. (425 aa)
	H3GLG6_PHYRM	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (254 aa)
	H3GLG0_PHYRM	Uncharacterized protein. (275 aa)
	H3GL19_PHYRM	Uncharacterized protein. (510 aa)
	H3GDY8_PHYRM	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (231 aa)
	H3GCM0_PHYRM	Uncharacterized protein. (802 aa)
	H3GCK5_PHYRM	HATPase_c domain-containing protein. (849 aa)
	H3GCE8_PHYRM	CULT domain-containing protein. (366 aa)
	H3GAL8_PHYRM	Calreticulin. (426 aa)
	H3G860_PHYRM	Uncharacterized protein; Belongs to the heat shock protein 70 family. (654 aa)
	H3G7V3_PHYRM	Uncharacterized protein. (395 aa)
	H3G775_PHYRM	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (455 aa)
	H3G758_PHYRM	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (447 aa)
	H3G6V4_PHYRM	UBIQUITIN_CONJUGAT_2 domain-containing protein. (161 aa)
	H3G6U6_PHYRM	Uncharacterized protein. (312 aa)
	H3G6D8_PHYRM	Uncharacterized protein. (185 aa)
	H3G698_PHYRM	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (456 aa)
	H3G697_PHYRM	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (451 aa)
	H3H792_PHYRM	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (280 aa)
	H3HAU5_PHYRM	UBX domain-containing protein. (434 aa)
	H3HCX8_PHYRM	Uncharacterized protein. (1277 aa)
	H3HD31_PHYRM	U-box domain-containing protein. (1154 aa)
	H3HEC9_PHYRM	TPR_REGION domain-containing protein. (227 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G697_PHYRM	H3G775_PHYRM	H3G697	H3G775	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.806
H3G698_PHYRM	H3G775_PHYRM	H3G698	H3G775	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.806
H3G6D8_PHYRM	H3GDY8_PHYRM	H3G6D8	H3GDY8	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.781
H3G6D8_PHYRM	H3GMU8_PHYRM	H3G6D8	H3GMU8	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.781
H3G6D8_PHYRM	H3GQS8_PHYRM	H3G6D8	H3GQS8	Uncharacterized protein.	OTU domain-containing protein.	0.937
H3G6D8_PHYRM	H3H037_PHYRM	H3G6D8	H3H037	Uncharacterized protein.	UBX domain-containing protein.	0.932
H3G6D8_PHYRM	H3HAU5_PHYRM	H3G6D8	H3HAU5	Uncharacterized protein.	UBX domain-containing protein.	0.946
H3G6D8_PHYRM	H3HCX8_PHYRM	H3G6D8	H3HCX8	Uncharacterized protein.	Uncharacterized protein.	0.827
H3G6D8_PHYRM	H3HD31_PHYRM	H3G6D8	H3HD31	Uncharacterized protein.	U-box domain-containing protein.	0.827
H3G6U6_PHYRM	H3G7V3_PHYRM	H3G6U6	H3G7V3	Uncharacterized protein.	Uncharacterized protein.	0.883
H3G6U6_PHYRM	H3G860_PHYRM	H3G6U6	H3G860	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.883
H3G6U6_PHYRM	H3GCK5_PHYRM	H3G6U6	H3GCK5	Uncharacterized protein.	HATPase_c domain-containing protein.	0.961
H3G6U6_PHYRM	H3H2J8_PHYRM	H3G6U6	H3H2J8	Uncharacterized protein.	Uncharacterized protein.	0.923
H3G6V4_PHYRM	H3G758_PHYRM	H3G6V4	H3G758	UBIQUITIN_CONJUGAT_2 domain-containing protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.442
H3G6V4_PHYRM	H3GCE8_PHYRM	H3G6V4	H3GCE8	UBIQUITIN_CONJUGAT_2 domain-containing protein.	CULT domain-containing protein.	0.502
H3G6V4_PHYRM	H3GXV1_PHYRM	H3G6V4	H3GXV1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	PRKCSH domain-containing protein.	0.502
H3G6V4_PHYRM	H3HCX8_PHYRM	H3G6V4	H3HCX8	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.741
H3G6V4_PHYRM	H3HD31_PHYRM	H3G6V4	H3HD31	UBIQUITIN_CONJUGAT_2 domain-containing protein.	U-box domain-containing protein.	0.741
H3G758_PHYRM	H3G6V4_PHYRM	H3G758	H3G6V4	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.442
H3G758_PHYRM	H3GCE8_PHYRM	H3G758	H3GCE8	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	CULT domain-containing protein.	0.533

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