(12 nodes) rRNA base methylation network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3H007_PHYRM	DUF2431 domain-containing protein. (387 aa)
	H3GTE2_PHYRM	Uncharacterized protein. (219 aa)
	H3H0D5_PHYRM	Uncharacterized protein. (708 aa)
	H3GVW1_PHYRM	Uncharacterized protein. (139 aa)
	H3G991_PHYRM	Uncharacterized protein. (125 aa)
	H3HBG2_PHYRM	E3 ubiquitin protein ligase; Belongs to the globin family. (1227 aa)
	H3HAG5_PHYRM	Uncharacterized protein. (669 aa)
	H3H3D3_PHYRM	PlsC domain-containing protein. (1300 aa)
	H3G9Y2_PHYRM	Uncharacterized protein. (302 aa)
	H3GFH8_PHYRM	Methyltransf_25 domain-containing protein. (247 aa)
	H3GHZ7_PHYRM	C2H2-type domain-containing protein. (328 aa)
	H3GN06_PHYRM	FDX-ACB domain-containing protein. (1481 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G991_PHYRM	H3G9Y2_PHYRM	H3G991	H3G9Y2	Uncharacterized protein.	Uncharacterized protein.	0.927
H3G991_PHYRM	H3GFH8_PHYRM	H3G991	H3GFH8	Uncharacterized protein.	Methyltransf_25 domain-containing protein.	0.927
H3G991_PHYRM	H3GTE2_PHYRM	H3G991	H3GTE2	Uncharacterized protein.	Uncharacterized protein.	0.401
H3G9Y2_PHYRM	H3G991_PHYRM	H3G9Y2	H3G991	Uncharacterized protein.	Uncharacterized protein.	0.927
H3G9Y2_PHYRM	H3GTE2_PHYRM	H3G9Y2	H3GTE2	Uncharacterized protein.	Uncharacterized protein.	0.446
H3G9Y2_PHYRM	H3GVW1_PHYRM	H3G9Y2	H3GVW1	Uncharacterized protein.	Uncharacterized protein.	0.927
H3GFH8_PHYRM	H3G991_PHYRM	H3GFH8	H3G991	Methyltransf_25 domain-containing protein.	Uncharacterized protein.	0.927
H3GFH8_PHYRM	H3GTE2_PHYRM	H3GFH8	H3GTE2	Methyltransf_25 domain-containing protein.	Uncharacterized protein.	0.446
H3GFH8_PHYRM	H3GVW1_PHYRM	H3GFH8	H3GVW1	Methyltransf_25 domain-containing protein.	Uncharacterized protein.	0.927
H3GTE2_PHYRM	H3G991_PHYRM	H3GTE2	H3G991	Uncharacterized protein.	Uncharacterized protein.	0.401
H3GTE2_PHYRM	H3G9Y2_PHYRM	H3GTE2	H3G9Y2	Uncharacterized protein.	Uncharacterized protein.	0.446
H3GTE2_PHYRM	H3GFH8_PHYRM	H3GTE2	H3GFH8	Uncharacterized protein.	Methyltransf_25 domain-containing protein.	0.446
H3GTE2_PHYRM	H3GVW1_PHYRM	H3GTE2	H3GVW1	Uncharacterized protein.	Uncharacterized protein.	0.401
H3GVW1_PHYRM	H3G9Y2_PHYRM	H3GVW1	H3G9Y2	Uncharacterized protein.	Uncharacterized protein.	0.927
H3GVW1_PHYRM	H3GFH8_PHYRM	H3GVW1	H3GFH8	Uncharacterized protein.	Methyltransf_25 domain-containing protein.	0.927
H3GVW1_PHYRM	H3GTE2_PHYRM	H3GVW1	H3GTE2	Uncharacterized protein.	Uncharacterized protein.	0.401

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