(11 nodes) Transcription preinitiation complex assembly network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	H3GM70_PHYRM	Bromo domain-containing protein. (1575 aa)
	H3GXH4_PHYRM	TAF domain-containing protein. (436 aa)
	H3H021_PHYRM	SANT domain-containing protein. (747 aa)
	H3HAG4_PHYRM	BTP domain-containing protein. (353 aa)
	H3HBD3_PHYRM	TFIIB-type domain-containing protein. (308 aa)
	H3HCA7_PHYRM	TAFII28 domain-containing protein. (402 aa)
	H3GP02_PHYRM	Uncharacterized protein. (429 aa)
	H3GV85_PHYRM	TFIIB-type domain-containing protein. (652 aa)
	H3GC30_PHYRM	TFIID_20kDa domain-containing protein. (199 aa)
	H3GFR8_PHYRM	C2H2-type domain-containing protein. (411 aa)
	H3GLX6_PHYRM	Uncharacterized protein. (318 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3GC30_PHYRM	H3GFR8_PHYRM	H3GC30	H3GFR8	TFIID_20kDa domain-containing protein.	C2H2-type domain-containing protein.	0.914
H3GC30_PHYRM	H3GLX6_PHYRM	H3GC30	H3GLX6	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.999
H3GC30_PHYRM	H3GM70_PHYRM	H3GC30	H3GM70	TFIID_20kDa domain-containing protein.	Bromo domain-containing protein.	0.999
H3GC30_PHYRM	H3GXH4_PHYRM	H3GC30	H3GXH4	TFIID_20kDa domain-containing protein.	TAF domain-containing protein.	0.999
H3GC30_PHYRM	H3HAG4_PHYRM	H3GC30	H3HAG4	TFIID_20kDa domain-containing protein.	BTP domain-containing protein.	0.998
H3GC30_PHYRM	H3HBD3_PHYRM	H3GC30	H3HBD3	TFIID_20kDa domain-containing protein.	TFIIB-type domain-containing protein.	0.914
H3GC30_PHYRM	H3HCA7_PHYRM	H3GC30	H3HCA7	TFIID_20kDa domain-containing protein.	TAFII28 domain-containing protein.	0.999
H3GFR8_PHYRM	H3GC30_PHYRM	H3GFR8	H3GC30	C2H2-type domain-containing protein.	TFIID_20kDa domain-containing protein.	0.914
H3GFR8_PHYRM	H3GLX6_PHYRM	H3GFR8	H3GLX6	C2H2-type domain-containing protein.	Uncharacterized protein.	0.867
H3GFR8_PHYRM	H3GM70_PHYRM	H3GFR8	H3GM70	C2H2-type domain-containing protein.	Bromo domain-containing protein.	0.953
H3GFR8_PHYRM	H3GV85_PHYRM	H3GFR8	H3GV85	C2H2-type domain-containing protein.	TFIIB-type domain-containing protein.	0.666
H3GFR8_PHYRM	H3GXH4_PHYRM	H3GFR8	H3GXH4	C2H2-type domain-containing protein.	TAF domain-containing protein.	0.866
H3GFR8_PHYRM	H3HAG4_PHYRM	H3GFR8	H3HAG4	C2H2-type domain-containing protein.	BTP domain-containing protein.	0.896
H3GFR8_PHYRM	H3HBD3_PHYRM	H3GFR8	H3HBD3	C2H2-type domain-containing protein.	TFIIB-type domain-containing protein.	0.540
H3GFR8_PHYRM	H3HCA7_PHYRM	H3GFR8	H3HCA7	C2H2-type domain-containing protein.	TAFII28 domain-containing protein.	0.935
H3GLX6_PHYRM	H3GC30_PHYRM	H3GLX6	H3GC30	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.999
H3GLX6_PHYRM	H3GFR8_PHYRM	H3GLX6	H3GFR8	Uncharacterized protein.	C2H2-type domain-containing protein.	0.867
H3GLX6_PHYRM	H3GM70_PHYRM	H3GLX6	H3GM70	Uncharacterized protein.	Bromo domain-containing protein.	0.999
H3GLX6_PHYRM	H3GXH4_PHYRM	H3GLX6	H3GXH4	Uncharacterized protein.	TAF domain-containing protein.	0.999
H3GLX6_PHYRM	H3HAG4_PHYRM	H3GLX6	H3HAG4	Uncharacterized protein.	BTP domain-containing protein.	0.985

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