STRINGSTRING
LSM3 LSM3 H3G510_PHYRM H3G510_PHYRM H3G542_PHYRM H3G542_PHYRM H3G549_PHYRM H3G549_PHYRM H3G5B7_PHYRM H3G5B7_PHYRM LSM4 LSM4 H3G5H2_PHYRM H3G5H2_PHYRM LSM5 LSM5 H3G7Q5_PHYRM H3G7Q5_PHYRM LSM8 LSM8 H3G878_PHYRM H3G878_PHYRM H3G8P4_PHYRM H3G8P4_PHYRM H3G8Y1_PHYRM H3G8Y1_PHYRM H3G917_PHYRM H3G917_PHYRM H3G919_PHYRM H3G919_PHYRM H3HAV5_PHYRM H3HAV5_PHYRM H3G9C0_PHYRM H3G9C0_PHYRM H3GIC6_PHYRM H3GIC6_PHYRM H3GKT1_PHYRM H3GKT1_PHYRM H3GMH5_PHYRM H3GMH5_PHYRM H3GNM0_PHYRM H3GNM0_PHYRM H3GWX1_PHYRM H3GWX1_PHYRM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
H3G510_PHYRMUncharacterized protein. (72 aa)
H3G542_PHYRMSmall nuclear ribonucleoprotein Sm D3. (85 aa)
H3G549_PHYRMSmall nuclear ribonucleoprotein G. (76 aa)
H3G5B7_PHYRMU6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (118 aa)
H3G5H2_PHYRMSmall nuclear ribonucleoprotein Sm D3. (73 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (67 aa)
H3G7Q5_PHYRMSmall nuclear ribonucleoprotein Sm D2. (96 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (88 aa)
H3G878_PHYRMUncharacterized protein. (150 aa)
H3G8P4_PHYRMSm domain-containing protein. (105 aa)
H3G8Y1_PHYRMNop domain-containing protein. (522 aa)
H3G917_PHYRMTr-type G domain-containing protein. (983 aa)
H3G919_PHYRMSm domain-containing protein. (84 aa)
H3HAV5_PHYRMSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
H3G9C0_PHYRMUncharacterized protein. (142 aa)
H3GIC6_PHYRMUncharacterized protein. (1600 aa)
H3GKT1_PHYRMUncharacterized protein. (962 aa)
H3GMH5_PHYRMU1-type domain-containing protein. (220 aa)
H3GNM0_PHYRMUncharacterized protein. (613 aa)
H3GWX1_PHYRMSFM domain-containing protein. (340 aa)
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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