(16 nodes) Cytosolic large ribosomal subunit network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

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protein homology

Your Input:
	H3GXK3_PHYRM	Ribosomal_L28e domain-containing protein. (147 aa)
	H3HD62_PHYRM	Uncharacterized protein. (95 aa)
	H3HCV1_PHYRM	Uncharacterized protein. (151 aa)
	H3GAD2_PHYRM	Uncharacterized protein. (135 aa)
	H3GA71_PHYRM	Ribosomal_L7Ae domain-containing protein. (112 aa)
	H3GA04_PHYRM	Uncharacterized protein. (120 aa)
	H3G9U1_PHYRM	Ribosomal_L7Ae domain-containing protein. (112 aa)
	H3G9D5_PHYRM	Uncharacterized protein. (111 aa)
	H3G980_PHYRM	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (206 aa)
	H3G927_PHYRM	Ribosomal protein L10. (208 aa)
	H3G7U4_PHYRM	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (147 aa)
	H3G707_PHYRM	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (98 aa)
	H3G6Y2_PHYRM	Ribos_L4_asso_C domain-containing protein. (368 aa)
	H3G5G6_PHYRM	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (173 aa)
	H3G5F7_PHYRM	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (35 aa)
	H3G5A3_PHYRM	Uncharacterized protein. (93 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5A3_PHYRM	H3G5F7_PHYRM	H3G5A3	H3G5F7	Uncharacterized protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.986
H3G5A3_PHYRM	H3G5G6_PHYRM	H3G5A3	H3G5G6	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.987
H3G5A3_PHYRM	H3G6Y2_PHYRM	H3G5A3	H3G6Y2	Uncharacterized protein.	Ribos_L4_asso_C domain-containing protein.	0.986
H3G5A3_PHYRM	H3G707_PHYRM	H3G5A3	H3G707	Uncharacterized protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.985
H3G5A3_PHYRM	H3G7U4_PHYRM	H3G5A3	H3G7U4	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.983
H3G5A3_PHYRM	H3G927_PHYRM	H3G5A3	H3G927	Uncharacterized protein.	Ribosomal protein L10.	0.986
H3G5A3_PHYRM	H3G980_PHYRM	H3G5A3	H3G980	Uncharacterized protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.988
H3G5A3_PHYRM	H3G9D5_PHYRM	H3G5A3	H3G9D5	Uncharacterized protein.	Uncharacterized protein.	0.986
H3G5A3_PHYRM	H3G9U1_PHYRM	H3G5A3	H3G9U1	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.953
H3G5A3_PHYRM	H3GA04_PHYRM	H3G5A3	H3GA04	Uncharacterized protein.	Uncharacterized protein.	0.987
H3G5A3_PHYRM	H3GA71_PHYRM	H3G5A3	H3GA71	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.953
H3G5A3_PHYRM	H3GAD2_PHYRM	H3G5A3	H3GAD2	Uncharacterized protein.	Uncharacterized protein.	0.987
H3G5A3_PHYRM	H3GXK3_PHYRM	H3G5A3	H3GXK3	Uncharacterized protein.	Ribosomal_L28e domain-containing protein.	0.984
H3G5A3_PHYRM	H3HCV1_PHYRM	H3G5A3	H3HCV1	Uncharacterized protein.	Uncharacterized protein.	0.987
H3G5F7_PHYRM	H3G5A3_PHYRM	H3G5F7	H3G5A3	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Uncharacterized protein.	0.986
H3G5F7_PHYRM	H3G5G6_PHYRM	H3G5F7	H3G5G6	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
H3G5F7_PHYRM	H3G6Y2_PHYRM	H3G5F7	H3G6Y2	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribos_L4_asso_C domain-containing protein.	0.998
H3G5F7_PHYRM	H3G707_PHYRM	H3G5F7	H3G707	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.998
H3G5F7_PHYRM	H3G7U4_PHYRM	H3G5F7	H3G7U4	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.998
H3G5F7_PHYRM	H3G927_PHYRM	H3G5F7	H3G927	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L10.	0.998

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